New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3121594 =	44 (0.760)	3 (0.050)	3/334	NT	6.7%	coding (269/423 nt)	PP_2738	putative Transcriptional regulator
	?	AE015451	3121649 =	41 (0.730)					coding (214/423 nt)	PP_2738	putative Transcriptional regulator

ATGTCACCTTTCGTGATCCCCTGCACCAGATACAGGGGCTGCAGGCCCTGCGTGCCTACTTCGAGCAGTTGTACGCCAACGCCACCGATATCCGCTACGCCTTCACCAGCGCCGACGAGGTAAAGCCCGGGCAGGGCTACCTGCGTTGGACACTGCAGTTTTGCCACCCGCGCCTGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3121774‑3121594 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggGCTTTACCTCGTCGGCGCTGGTGAAGGCGTAGCGGATATCGGTGGCGTTGGCGTACAACTGCTCGAAGTAGGCACGCAGGGCCTGCAGCCCCTGTATCTGGTGCAGGGGATCACGAAAGGTGACATCGTCGCTGTACAGTTTATCCAGCGTGTCGAGGCTAGCCCCATCAAGGCGGGCGAAGCGCTCGGCGAATTGTTGTAG  >  AE015451/3121649‑3121850                                                                                                                                                                                                                                                                                                                                                                                                 ATGTCACCTTTCGTGATCCCCTGCACCAGATACAGGGGCTGCAGGCCCTGCGTGCCTACTTCGAGCAGTTGTACGCCAACGCCACCGATATCCGCTACGCCTTCACCAGCGCCGACGAGGTAAAGCCCGGGCAGGGCTACCTGCGTTGGACACTGCAGTTTTGCCACCCGCGCCTGGCCGGGCTTTACCTCGTCGGCGCTGGTGAAGGCGTAGCGGATATCGGTGGCGTT                                                                                                                                                           >  1:290766/1‑230                       GCACCAGATACAGGGGCTGCAGGCCCTGAGTGCCTACTTCGAGCAGTTGTACGCCAACGCCACCGATATCCGCTACGCCTTCACCAGCGCCGACGAGGTAAAGCCCGGGCAGGGCTACCTGCGTTGGACACTGCAGTTTTGCCACCCGCGCCTGGCCGGGCTTTACCTCGTCGGCGCTGGTGAAGGC                                                                                                                                                                                <  1:759251/187‑1                                                                        cACGCCAACGCCCCCGATATCCGCTACGCCTTCACCAGCGCCGACGAGGTAAAGCCCGGGCAGGGCTACCTGCGTTGGACACTGCAGTTTTGCCACCCGCGCCTGGCCGGGCTTTACCTCGTCGGCGCTGGTGAAGGCGTAGCGGATATCGGTGG                                                                                                                                                               <  2:290763/154‑1                                                                                                                                                                                   CGGGCTTTACCTCGTCGGCGCTGGTGAAGGCGTAGCGGATATCGGTGGCGTTGGCGTACAACTGCTCGAAGTAGGCACGCAGGGCCTGCAGCACCTGTATCTGGTGCAGGGGATCACGAAAGGTGACATCGTCGCTGTACAGTTTATCCAGCGTGTCGAGGCTAGCCCCATCAAGGCGGGCGAAGCGCTCGGCGAA           >  1:23334/1‑196                                                                                                                                                                                    GGGCTTTACCTCGTCGGCGCTGGTGAAGGCGTAGCGGATATCGGTGGCGTTGGCGTACAACTGCTCGAAGTAGGCACGCAGGGCCTGCAGCCCCTGTATCTGGTGCAGGGGATCACGAAAGGTGACATCGTCGC                                                                        <  2:325854/134‑1                                                                                                                                                                                    GGGCGTCACCTCGTCGGCGCTGGTGAAGGCGTAGCGGATAGCGGTGGCGTTGGCGTACAACTGCTCGAAGTAGGCACGCAGGGCCTGCAGCCCCTGTATCTGGTGCAGGGGATCACGAAAGGTGACATCGTCGCTGTACAGTTTATCCAGCGTGTCGAGGCTAGCCCCATCAAGGCGGGCGAAGCGCTCGGCGAATTGTTGTAG  <  2:141155/204‑1                                                                                                                                                                                                                                                                                                                                                                                                 ATGTCACCTTTCGTGATCCCCTGCACCAGATACAGGGGCTGCAGGCCCTGCGTGCCTACTTCGAGCAGTTGTACGCCAACGCCACCGATATCCGCTACGCCTTCACCAGCGCCGACGAGGTAAAGCCCGGGCAGGGCTACCTGCGTTGGACACTGCAGTTTTGCCACCCGCGCCTGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3121774‑3121594 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggGCTTTACCTCGTCGGCGCTGGTGAAGGCGTAGCGGATATCGGTGGCGTTGGCGTACAACTGCTCGAAGTAGGCACGCAGGGCCTGCAGCCCCTGTATCTGGTGCAGGGGATCACGAAAGGTGACATCGTCGCTGTACAGTTTATCCAGCGTGTCGAGGCTAGCCCCATCAAGGCGGGCGAAGCGCTCGGCGAATTGTTGTAG  >  AE015451/3121649‑3121850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.