New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3325283	55 (0.950)	3 (0.050)	3/326	NT	5.5%	coding (36/1620 nt)	mqo‑III	malate:quinone oxidoreductase
	?	AE015451	= 3325294	50 (0.910)					coding (47/1620 nt)	mqo‑III	malate:quinone oxidoreductase

GCGTCGTACTTGGCGGCGTCGGCAAGGATGCCGAGTTTGGCGATGAGTTGCATGGTGGCTGACCTGCGATACTGAGTATTCATACAGTATTTTGAGATGTGGCCGATTGCAAGTGTTTGTGCGTCGTCATACCCGACTAAACGCGTCGGCTAAGCTTGTGGCTGAACCACGGACAGCAACGAGGCGCGGGAGAGGTTATGAAGATCACCATCAAGCCAAAACTGGCGATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3325051‑3325283 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatggccAAGGCCAGCCCGGCCATCGCCAGTTTTGGCTTGATGGTGATCTTCATAACCTCTCCCGCGCCTCGTTGCTGTCCGTGGTTCAGCCACAAGCTTAGCCGACGCGTTTAGTCGGGTATGACGACGCACAAACACTTGCAATCGGCCACATCTCAAAATACTGTATGAATACTCAGTATCGCAGGTCAGCCACCATGCAACTCATCGCCAAACTCGGCATCCTTGCCGACGCC  <  AE015451/3325294‑3325065                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCGTGGTACTTGGGGGCGTCGGCAAGGATGCCGAGTTTGGCGATGAGTTGCATGGTGGCTGACCTGCGATACTGAGTATTCATACAGTATTTTGAGATGTGGCCGATTGCGAGTGTTTGTGCGTCGTCATACCCGACTAAACGCGTCGGCTAAGCTTGTGGCTGAACCACGGACAGCAACGAGGCGCGGGAGAGGTTATGAAGATCACCATCAAGCCAAAACTGGCGATGGCC                                                                                                                                                                                                                                        <  1:529373/233‑1       gACTTGGCGGCGTCGGCAAGGATGCCGAGTTTGGCGATGAGTTGCATGGTGGCTGACCTGCGATACTGAGTATTCATACAGTATTTTGAGATGTGGCCGATTGCAAGTGTTTGTGCGTCGTCATACCCGACTAAACGCGTCGGCTAAGCTTGTGGCTGAACCACGGACAGCAACGAGGCGCGGGAGAGGTTATGAAGATCACCATCAAGCCAAAACTGGCGAT                                                                                                                                                                                                                                            <  2:465976/222‑1                                                                                   TACAGTATTTTGAGATGTGGCCGATTGCAAGTGTTTGTGCGTCGTCATACCCGACTAAACGCGTCGGCTAAGCTTGTGGCTGAACCACGGACAGCAACGAGGCGCGGGAGAGGTTATGAAGATCACCATCAAGCCAAAACTGGCGATGGC                                                                                                                                                                                                                                         >  1:29583/1‑150                                                                                                GATGTGGCCGATTGCAAGTGTTTGTGCGTCGTCATACCCGACTAAACGCGTCGGCTAAGCTTGTGGCTGAACCACGGACAGCAACGAGGCGCGGGAGAGGTTATGAAGATCACCATCAAGCCAAAAATGGCGATG                                                                                                                                                                                                                                           >  2:337736/1‑135                                                                                                                                                                                    CGAGGCGCGGGAGAGGTTATGAAGATCACCATCAAGCCAAAACTGGCGATGGCCAAGTCCAGCCCGGCCATCGCCAGTTTTGGCTTGATGGTGATCTTCATAACCTCTCCCGCGCCTCGTTGCTGTCCGTGGTTCAGCCACAAGCTTAGCCGACGCGTTTAGTCGGGTATGACGACGCACAAAC                                                                                                      >  1:523113/1‑184                                                                                                                                                                                    CGAGGCGCGGGAGAGGTTATGAAGATCACCATCAAGCCAAAACTGGCGATGGCCAAGGCCAGCCCGGCCATCGCCAGTTTTGGCTTGATGGTGATCTTCATAACCTCTCCCGCGCCTCGTTGCTGTCCGTGGTTCAGCCACAAGCTTAGCCGACGCGTTTAGTCGGGTATGACGACGCACAAAC                                                                                                      <  2:523110/184‑1                                                                                                                                                                                                                 CATCAAGCCAAAACTGGCGATGGCCAAGGCCAGCCCGGCCATCGCCAGTTTTGGCTTGATGGTGATCTTCATAACCTCTCCCGCGCCTCGTTGCTGTCCGTGGTTCAGCCACAAGCTTAGCCGACGCGTTTAGTCGGGTATGACGACGCACAAACACTTGCAATCGGCCACATCTCAAAATACTGTATGAATACTCAGTATCGCAGGTCAGCCACCATGCAACTCATCGCCAAACT                     >  2:843314/1‑236                                                                                                                                                                                                                                  CGATGGCCAAGGCCAGCCCGCCCATCGCCAGTTTTGGCTTGATGGTGATCTTCATAACCTCTCCCGCGCCTCGTTGCTGTCCGTGGTTCAGCCACAAGCTTAGCCGACGCGTTTAGTCGGGTATGACGACGCACAAACACTTGCAATCGGCCACATCTCA                                                                                <  2:725209/160‑1                                                                                                                                                                                                                                      GGCCAAGGCCAGCCCGGCCATCGCCAGTTTTGGCTTGATGGTGATCTTCATAACCTCTCCCGCGCCTCGTTGCTGCCCGTGGTTCAGCCACAAGCTTAGCCGACGCGTTTAGTCGGGTATGACGTCGCACAAACACTTGCAATCGGCCACATCTCAAAATACTGTATGAATACTCAGTATCGCAGGTCAGCCACCATGCAACTCATCGCCAAACTCGGCATCCTTGCCGACGCC  <  1:592610/234‑1                                                                                                                                                                                                                                        CCAAGGCCAGCCCGGCCATCGCCAGTTTTGGCTTGATGGTGATCTTCATAACCTCTCCCGCCCCTCGTTGCTGTCCGTGGTTCAGCCACAAGCTTAGCCGACGCGTTTAGTCGGGTATGACGACGCACAAACACTTGCAATCGGCC                                                                                        <  2:589461/146‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCGTCGTACTTGGCGGCGTCGGCAAGGATGCCGAGTTTGGCGATGAGTTGCATGGTGGCTGACCTGCGATACTGAGTATTCATACAGTATTTTGAGATGTGGCCGATTGCAAGTGTTTGTGCGTCGTCATACCCGACTAAACGCGTCGGCTAAGCTTGTGGCTGAACCACGGACAGCAACGAGGCGCGGGAGAGGTTATGAAGATCACCATCAAGCCAAAACTGGCGATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3325051‑3325283 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatggccAAGGCCAGCCCGGCCATCGCCAGTTTTGGCTTGATGGTGATCTTCATAACCTCTCCCGCGCCTCGTTGCTGTCCGTGGTTCAGCCACAAGCTTAGCCGACGCGTTTAGTCGGGTATGACGACGCACAAACACTTGCAATCGGCCACATCTCAAAATACTGTATGAATACTCAGTATCGCAGGTCAGCCACCATGCAACTCATCGCCAAACTCGGCATCCTTGCCGACGCC  <  AE015451/3325294‑3325065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.