New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 3409928 = | 57 (0.990) | 6 (0.110) | 5/332 | NT | 9.3% | intergenic (‑494/‑42) | PP_3022/PP_3024 | Transcriptional regulator, AraC family/conserved protein of unknown function |
? | AE015451 | = 3450711 | 62 (1.110) | intergenic (‑125/+258) | PP_5558/PP_3069 | putative transcriptional xre family of phage origin/Outer membrane autotransporter |
TTTGCCAAGTCCGCTGTTTTGCAATGCGCTTATGCCGAAGGTAGTAGTCTTTTTTTAAAAGCTTCACATGATATCCATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3410135‑3409928 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggttACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAGATGGCTTTCTCGCTATACTGTTCATGCATACAGTATAGCGAGTAGTGACCATGACGGCCGACATCATTACCTTCCCGACACCGACCATGGAAGAAGGCATCCCGAAAGAGATCGAAGAATTTTTCGCTGACCTCCCTTTAGGTTTCCGCTCAG < AE015451/3450711‑3450478 TTTGCCAAGTCCGCTGTTTTGCAATGCGCTTATGCCGAAGGTAGTAGTCTTTTTTTAAAAGCTTCACATGATATCCATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGACGCTAGAGTTTATATTGTCAGTCGCTAGGGTTACCTAGCGACTGATAATA > 2:300840/1‑226 TTTGCCAAGTCCGCTGTTTTGCAATGCGCTTATGCCGAAGGTAGTAGTCTTTTTTTAAAAGCTTCACATGATATCCATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGG > 2:890278/1‑206 CGCTGTTTTGCAATGCGCTTATGCCGAAGGTAGTAGTCTTTTTTTAAAAGCTTCACATGATATCCATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTTACC > 2:365390/1‑200 TATGCCGAAGGTAGTAGTCTTTTTTTAAAAGCTTCACATGATATCCATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTT < 2:601192/178‑1 ACATGATATCCATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGTGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAGATGGCTTTCTCG < 1:257129/236‑1 TGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAGATGGCTTTCTCGCTATACTGTTCATGCATACAGTATAGCGAGTAGTGACCATGACGGCCGACATCAT < 1:931245/236‑1 GCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAGATGGCTTTCTCGCTATACTGTTCATGCATACAGTATAG > 2:931242/1‑206 tAAGCTAGAGTTTATATTGTCAGTCGTTAGGGTTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAGATGGCTTTCTCGCTATACTGTTCATGCATACAGTATAGCGAGTAGTGACCATGACGGCCGACATCAT < 2:359432/181‑1 AGAGTTTATATTGTCAGTCGCTAGGGTTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAGATGGCTTTCTCGCTATACTGTTCATGCATACAGTATAGCGAGTAGTGACCATGACGGCCGACATCATTACCTTCCCGACACCGACCATGGAAGAAGGCATCCCGAAAGAGATCGAAGAATTTTTC < 2:1052414/234‑1 TTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAGATGGCTTTCTCGCTATACTGTTCATGCATACAGTATAGCGAGTAGTGACCATGACGGCCGACATCATTACCTTCCCGACACCGACCATGGAAGAAGGCATCCCGAAAGAGATCGAAGAATTTTTCGCTGACCTCCCTTTAGGTTTCCGCTCAG > 1:772208/1‑236 TTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAGATGGCTTTCTCGCTATACTGTTCATGCATACAGTATAGCGAGTAGTGACCATGACGGCCGACATCATTACCTTCCCGACACCGACC > 2:526102/1‑169 TTTGCCAAGTCCGCTGTTTTGCAATGCGCTTATGCCGAAGGTAGTAGTCTTTTTTTAAAAGCTTCACATGATATCCATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3410135‑3409928 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggttACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAGATGGCTTTCTCGCTATACTGTTCATGCATACAGTATAGCGAGTAGTGACCATGACGGCCGACATCATTACCTTCCCGACACCGACCATGGAAGAAGGCATCCCGAAAGAGATCGAAGAATTTTTCGCTGACCTCCCTTTAGGTTTCCGCTCAG < AE015451/3450711‑3450478 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |