New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3837916	60 (1.040)	4 (0.070)	4/328	NT	6.5%	coding (1511/2673 nt)	PP_3388	conserved protein of unknown function
	?	AE015451	= 3837926	58 (1.050)					coding (1521/2673 nt)	PP_3388	conserved protein of unknown function

GTCAGCGAACGCTTATTGCAAGCGCTGGACCGCTACGACAACGCCGACCTCATCAACGGCCTGGCCTTTGCCGAACAGACCGGCCAGTGCGTGATCGGCATGGAGTTGAGTGAAGGGGGCACGAAGGTACTGGACCACTGGTGGCGCAGTGACGTGGCAGACCGGGGCAACCTGGCAATACGCGGCATCACCTACAACCAGGAGGACCTGCGGGAAGAACTGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3837690‑3837916 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcggcTTCCAGCAGCGCCGCCAGTTCTTCCCGCAGGTCCTCCTGGTTGTAGGTGATGCCGCGTATTGCCAGGTTGCCCCGGTCTGCCACGTCACTGCGCCACCAGTGGTCCAGTACCTTCGTGCCCCCTTCACTCAACTCCATGCCGATCACGCACTGGCCGGTCTGTTCGGCAAAGGCCAGGCCGTTGATGAGGTCGGCGTTGTCGTAGCGGTCCAGCGCTTGCAATAAGCGTTC  <  AE015451/3837926‑3837696                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTCAGCGAACGCTTATTGCAAGCGCTGGACCGCTACGACAACGCCGACCTCATCAACGGCCTGGCCTTTGCCGAACAGACCGGCCAGTGCGTGATCGGCATGGAGTTGAGTGAAGGGGGCACGAAGGTACTGGACCACTGGTGGCGCAGTGACGTGGCAGACCGGGGCAACCTGGCAATACGCGGCATCACCTACAACCAGGAGGACCTGCGGGAAGAACTGGCGG                                                                                                                                                                                                                                          >  2:656005/1‑226                                  TACGACAACGCCGACCTCATCAACGGCCTGGCCTTGGCCGAACAGACCGGCCAGTGCGTGATCGGCATGGAGTTGAGTGAAGGGGGCACGAAGGTACTGGACCACTGGTGGCGCAGTGACGTGGCAGACCGGGGCAACCTGGCAATACGCGGCATCACCTACAACCAGGAGGACCTGCGGGAAGAACTGGCG                                                                                                                                                                                                                                           <  1:286973/192‑1                                   ACGACAACGCCGACCTCATCAACGGCGTGGCCTGTGCCGAACAGACCGGCCAGTGCGTGATCGGCATGGAGTTGAGTGAAGGGGGCACGAAGGTACTGGACCACTGGTGGCGCAGTGACGTGGCAGACCGGGGCAACCTGGCAATACGCGGCATCACCTACAACCAGGAGGACCTGCGGGAAGAACTGGCG                                                                                                                                                                                                                                           <  2:31074/191‑1                                                        ACGGCCTGGCCTTTGCCGAACAGACCGGCCAGTGCGTGATCGGCATGGAGTTGAGTGAAGGGGGCACGAAGGTACTGGACCACTGGTGGCGCAGTGACGTGGCAGACCGGGGCAACCTGGCAATACGCGGCATCACCTACAACCAGGAGGACCTGCGGGAAGAACTGGCGGCTTCCAGCAGCGCCGCCA                                                                                                                                                                                                                        <  1:347786/189‑1                                                                         GAACAGACCGGCCAGTGCGTGATCGGCATGGAGTTCAGTGAAGCGGGCACGAAGGTACTGGACCACTGGTGGCGCAGTGACGTGGCAGACCGGGGCAACCTGGCAGTACGCGGCATCACCTACAACCAGGAGGACCTGCGGGAAGAACTGGCG                                                                                                                                                                                                                                           >  1:1030897/1‑153                                                                              GACCGGCCAGTGCGTGATCGGCATGGAGGTGAGTGAAGGGGGCCCGAAGGTACTGGACCACTGGTGGCGCAGTGACGTGGCAGACCGGGGCAACCTGGCAATACGCGGCATCACCTACAACCAGGAGGACCTGCGGGAAGAACTGG                                                                                                                                                                                                                                             <  2:350805/146‑1                                                                                                                ggAGGGGGCACGAAGGTACTGGACCACTGGTGGCGCAGGGACGTGGCAGACCGGGGCAACCTGGCAATACGCGGCATCACCTACAACCAGGAGGACCTGCGGGAAGAACTGGCGG                                                                                                                                                                                                                                          >  1:328044/3‑115                                                                                                                     gcGCACGAAGGTACTGGACCACTGGTGGCGCAGTGACGTGGCAGACCGGGGCAACCTGGCAATACGCGGCATCACCTACAACCAGGAGGACCTGCGGGAAGAACTGGCG                                                                                                                                                                                                                                           <  2:433207/107‑1                                                                                                                                                  GCAGTGACGTGGCAGACCGGGGCAACCTGGCAATACGCGGCATCACCTACAACCAGGAGGACCTGCGGGAAGAACTGGCGGCTTCCAGCAGCGCCGCCAGTTCTTCCCGCAGGTCCTCCTGGTTGTAGGTGATGCCGCGTATTGCCAGGTTGCCCCGGTCTGCCACGTCACTGCGCCACCAG                                                                                                                                     >  1:1007348/1‑182                                                                                                                                                      TGACGTGGCAGACCGGGGCAACCTGGCAATACGCGGCATCACCTACAACCAGGAGGACCTGCGGGAAGAACTGGCGGCTTCCAGCAGCGCCGCCAGTTCTTCCCGCAGGTCCTCCTGGTTGTAGGTGATGCCGCGTATTGCCAGGTTGCCCCGGTCTGCCACGTCACTGCGCCACCAGTGGTCCAGTACCTTCGTGCCCCCTTCACTCAACTCCATGCCGATCACGCACTGGCC                                                                             <  2:1007345/234‑1                                                                                                                                                                                                            GGACCTGCGGGAAGAACTGGCGGCTTCCAGCAGCGCCGCCAGTTCTTCCCGCAGGTCCTCCTGGTTGTAGGTGCTGCCGCGTATTGCCAGGTTGCCCCGGTCTGCCACGTCACTGCGCCACCAGTGGTCCAGTACCTTCGTGCCCCCTTCACTCACCTCCATGCCGATCACGCACTGGCCGGTgc                                                                        >  2:501438/1‑183                                                                                                                                                                                                                               gccGCTTCCAGCAGCGCCGCCAGTTCTTCCCGCAGGTCCTCCTGGTTGTAGGTGATGCCGCGTATTGCCAGGTTGCCCCGGTCTGCCACGTCACTGCGCCACCAGTGGTCCAGTACCTTCGTGCCCCCTTCACTCAACTCCATGCCGATCACGCACTGGCCGGTCTGTTCGGCAAAGGCCAGGCCGTTGATGAGGTCGGCGTTGTCGTAGCGGTCCAGCGCTTGCAATCATCGTTC  <  1:86517/233‑1                                                                                                                                                                                                                               GCGGCTTCCCGCAGCGCCGCCAGTTCTTCCCGCAGGTCCTCCTGGTTGTACGTGATGCCGCGTCTTGCCAGGTTGCCCCGGTCTGCCACGTCACTGCGCCACCAGTGGTCCAGTACCTTCGTGC                                                                                                                  <  2:890663/124‑1                                                                                                                                                                                                                                CGGCTTCCAGCAGCGCCGCCAGTTCTTCCCGCAGGTCCTCCTGGTTGTAGGTGATGCCGCGTATTGCCAGGTTGCCCCGGTCTGCCACGTCACTGCGCCACCAGTGGTCCAGTACCTTCGTGCCCCCTTCACTCAACTCCATGCCGATCACGCACTGGCCGGTCTGTTCGGCAAAGGCCAGGCCGTTGATGAGGTCGGCGT                                    <  1:255307/201‑1                                                                                                                                                                                                                                  GCTTCCAGCAGCGCCGCCAGTTCTTCCCGCAGGTCCTCCTGGTTGTAGGTGATGCCGCGTATTGCCAGGTTGCCCCGGTCTGCCACGTCACTGCGCCACCAGTGGTCCAGTACCTTCGTGCCCCCTTCACTCAACTCCATGCCGATCACGCACTGGCCGGTCTGTTCGGCAAAGGCCAGGCCGTTGATGAGGTCGGCGTTGTCGTAG                            >  1:731607/1‑207                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTCAGCGAACGCTTATTGCAAGCGCTGGACCGCTACGACAACGCCGACCTCATCAACGGCCTGGCCTTTGCCGAACAGACCGGCCAGTGCGTGATCGGCATGGAGTTGAGTGAAGGGGGCACGAAGGTACTGGACCACTGGTGGCGCAGTGACGTGGCAGACCGGGGCAACCTGGCAATACGCGGCATCACCTACAACCAGGAGGACCTGCGGGAAGAACTGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3837690‑3837916 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcggcTTCCAGCAGCGCCGCCAGTTCTTCCCGCAGGTCCTCCTGGTTGTAGGTGATGCCGCGTATTGCCAGGTTGCCCCGGTCTGCCACGTCACTGCGCCACCAGTGGTCCAGTACCTTCGTGCCCCCTTCACTCAACTCCATGCCGATCACGCACTGGCCGGTCTGTTCGGCAAAGGCCAGGCCGTTGATGAGGTCGGCGTTGTCGTAGCGGTCCAGCGCTTGCAATAAGCGTTC  <  AE015451/3837926‑3837696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.