New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3970610	NA (NA)	5 (0.100)	5/310	NT	NA	coding (529/1536 nt)	PP_3501	transposase
	?	AE015451	= 3970594	NA (NA)					coding (513/1536 nt)	PP_3501	transposase

GTCACAGGCCGAGCCACGGCAATCGCCCAAACGTGCACCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3970366‑3970610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccggtaccggcgcCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCGGCCTGTGACG  <  AE015451/3970594‑3970365                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GTCACAGGCCGAGCCACGGCAATCGCCCAAACGTGCACCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGG                                                                                                                                                                                                                                                 <  1:579149/236‑1      AGGCCGAGCCACGGCAATCGCCCAAACGTGCACCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCG                                                                                                                                                                                                                                            <  1:731108/236‑1        GCCGAGCCACGGCAATCGCCCAAACGTGCACCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGG                                                                                                                                                                                                                                           <  1:987361/235‑1               CACGGCAATCGCCCAAACGTGCACCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGG                                                                                                                                                                                                                                                       >  1:617293/1‑216                            cacACGTGCCCCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCC                                                                                                                                                                                                                                                   <  2:288378/204‑1                                             CGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGG                                                                                                                                                                                                                                           <  2:474805/198‑1                                                          GCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACC                                                                                                                                                                                                                                             <  2:887023/183‑1                                                                                                          CTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCG                                                                                                                                                                                                                                                  >  1:51488/1‑130                                                                                                                             cGCGAAGCCGTCAGCGAGAAGCTGGATTACCCGCCAGGGGTATTCCCGGTCGCGCATCAGGGGCGTGGCAACTGGGCCTGCCGTCAGTGCGAAACACTGAGCCAGGCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATT                                                                                                                                                                                                     <  2:174404/155‑1                                                                                                                                                  CTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGC                                                                                                                                                                                                          <  2:1063355/130‑1                                                                                                                                                           ACGCCAGGGGTATTCACGGTCGAGCACCATGTGCGTGGCAAATGGGCCGGCCGTCAGTGCGAAACACTGACCCAGGCGCCGGTACCGGCGCATGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAA                                                                                                                                                                         <  1:123543/154‑1                                                                                                                                                            CGCCAGGGGTATTCCCGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTTCGAAACCCTGATCCAGGCGCCGGTCCCGGCGCCTG                                                                                                                                                                                                                                     <  2:304315/93‑1                                                                                                                                                             GCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGG                                                                                                                                                                                                                                           <  2:352877/86‑1                                                                                                                                                                                                                    gGCGAAACACTGATCCAGGCGCGCGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGAAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCC                                                                                                                                                      <  1:162271/115‑1                                                                                                                                                                                                                            ACTGATCCAGGCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCACGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGC                                                                                                           >  2:575506/1‑151                                                                                                                                                                                                                                   CAGGCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGCATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGTGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGG                                              >  2:204634/1‑205                                                                                                                                                                                                                                   CAGGCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCG                   >  2:687644/1‑232                                                                                                                                                                                                                                   CAGGCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATG                                         >  1:156972/1‑210                                                                                                                                                                                                                                      GCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGG                                                                                             >  2:324847/1‑155                                                                                                                                                                                                                                       CGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGA                                                         <  2:813080/190‑1                                                                                                                                                                                                                                        GCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGG                            >  2:640806/1‑218                                                                                                                                                                                                                                         CCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCGGC          >  1:951024/1‑235                                                                                                                                                                                                                                         CCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTT                               >  2:422850/1‑214                                                                                                                                                                                                                                         CCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCA                                            >  2:244644/1‑201                                                                                                                                                                                                                                         CCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGT                                                                                 >  2:1090527/1‑164                                                                                                                                                                                                                                         CCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGC                                                                                                                                                               <  1:352880/86‑1                                                                                                                                                                                                                                                CGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCGGCCTGTGACG  <  1:877255/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GTCACAGGCCGAGCCACGGCAATCGCCCAAACGTGCACCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3970366‑3970610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccggtaccggcgcCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCGGCCTGTGACG  <  AE015451/3970594‑3970365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.