New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3971345	NA (NA)	6 (0.110)	6/326	NT	NA	coding (1264/1536 nt)	PP_3501	transposase
	?	AE015451	= 3971349	NA (NA)					coding (1268/1536 nt)	PP_3501	transposase

CAGGCCCTGCACTCGATCAGCGGTTTGTACGAGGTCGAACGCCAAGCGCGGGACATGAGTGATGAAGATCGTTGGCGAATACGTCAGGAAATGGCGGTGCCAATCCTCAAAACACTGCATGACTGGATGTTGGCCCAGCGCGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3971138‑3971345 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtagcgcGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTAGCCGTGGCTGATCCGTTGGGCACCAAGTCGCGCTGGGCCAACATCCAGTCATGCAGTGTTTTGAGGATTGGCACCGCCATTTCCTGACGTATTCGCCAACGATCTTCATCACTCATGTCCCGCGCTTGGCGTTCGACCTCGTACAAACCGCTGATCGAGTGCAGGGCCTGTTCAGCCAGCTGGCTTTTATT  <  AE015451/3971349‑3971117                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAGGCCCTGCACTCGATCAGCGGTTTGTACGAGGTCGAACGCCAAGCGCGGGACATGAGTGATGAAGATCGTTGGCGAATACGTCAGGAAATGGCGGTGCCAATCCTCAAAACACTGCATGACTGGATGTTGGCCCAGCGCGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGC                                                                                                                                                                                                                                             <  1:981087/206‑1        TGCACTCGATCAGCGGTTTGTACGAGGTCGAACGCCAAGCGCGGGACATGAGTGATGAAGATCGTTGGCGAATACGTCAGGAAATGGCGGTGCCAATCCTCAAAACACTGCATGACTGGATGTTGGCCCAGCGCGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTA                                                                                                                                                                                                                                               >  1:862285/1‑197                                                      CATGAGTGATGAAGATCGTTGGCGAATACGTCAGGAAATGGCGGTGCCAATCCTCAAAACACTGCCTGACTGGATGTTGGCCCAGCGCGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCCCCATTACAGCCTGCAAAGCTGGGTAG                                                                                                                                                                                                                                              >  2:139592/1‑152                                                                 AAGATCGTTGGCGAATACGTCAGGAAATGGGGGTGCCAATCCTCAAAACACTGCATGACTGGATGTTGGCCCAGCGCGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGATGGGTAGC                                                                                                                                                                                                                                             >  2:643605/1‑142                                                                                                                       ATGACTGGATGTTGGCCCAGCGCGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAG                                                                                                                                                                                                                                              >  1:788272/1‑87                                                                                                                       ATGACTGGATGTTGGCCCAGCGCGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAG                                                                                                                                                                                                                                              <  2:788269/87‑1                                                                                                                                        CAGCGCGACTTGGTGCCCAACGCATCAGCCACGGCTAAAGCCCTCGATTACCGCCTGAAACGCTGGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAAGCGAGGGCTTTCGCCGTGGCTGGTCCGTTG                                                                                                                                                                               >  2:1078087/1‑133                                                                                                                                             CGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGC                                                                                                                                                                                                                                             >  2:452133/1‑66                                                                                                                                                                          CTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTAGCCGTGGCTGATCCGTTGGGCACCAAGTCGCGCTGGGCCAACATC                                                                                                                                                    <  1:75597/126‑1                                                                                                                                                                          CTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTAGCCGTGGCTGATCCGTTGGGCACCAAGTCGCGCTGGGCCAACATC                                                                                                                                                    >  2:75595/1‑126                                                                                                                                                                            AAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTAGCCGTGGCTGATCCGTTGGGCACCAAGTCGCGCTGGGCCAACATCCAGTCATGCAGTGTTTTGAGGATTGGC                                                                                                                         >  2:800892/1‑151                                                                                                                                                                                     GATTACAGCCTGAAACGCTGGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTAGCCGTGGCTGATCCGTTGGGCACCAAGTCGCGCTGGGCCAACATCCAGTCATGCAGTGTTTTGAGGATTGGCACCGCCATTTCCTGACGTATTCGCCAACGATCTTCATCACTCATGTCCCGCGCTTGGCGTTCGACCTC                                                     >  2:991730/1‑210                                                                                                                                                                                       TTACAGCCTGAAACGCTGGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTAGCCGTGGCTGATCCGTTGGGCACCAAGTCGCGCTGGGCCAACATCCAGTCATGCAGTGTTTTGAGGATTGGCTCCGCCATTTCCTGACGTATTCGCCA                                                                                               >  2:529633/1‑166                                                                                                                                                                                                       cGGGTAGCGCGTCAGCGCTCCCAAGCGTTTCAGGCTGTAATCGAGGGCTTTAGCCGTGGCTGATCCGTTGGGCACCAAGTCGCGCTGGGCCAACATCCAGTCATGCAGTGTTTTGAGGATTGGCACCGCCATTTCCTGACGTATTCGCCAACGATCTT                                                                                       <  1:103306/157‑1                                                                                                                                                                                                          GTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTAGCCGTGGCTGATCCGTTGGGCACCAAGTCGCGCTGGGCCAACATCCAGTCATGCAGTGTTTTGAGGATTGGCACCGCCATTTCCTGACGTATTCGCCAACGATCTTCATCACTCATGTCCCGCGCTTGGCGTTCGACCTCGTACAAACCGCTGATCGAGTGCAGGGCCTGTTCAGCCAGCTGGCTTT      >  1:489081/1‑236                                                                                                                                                                                                          GTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTAGCCGTGGCTGATCCGTTGGGCACCAAGTCGCGCTGGGCCAACATCCAGTCATGCAGTGTTTTGAGGATTGGCACCGCCATTTCCTGACGTATTCGCCAACGATCTTCATCACTCATGTCCCGCGCTTGGCGTTCGACCTCGTACAAACCGCTGATCGAGTGCAGGGCCTGTTCAGCCAGCTGGCT        >  2:518524/1‑234                                                                                                                                                                                                                CGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTAGCCGTGGCTGATCCGTTGGGCACCAAGTCGCGCTGGGCCAACATCCAGTCATGCAGTGTTTTGAGGATTGGCACCGCCATTTCCTGACGTATTCGCCAACGATCTTCATCACTCATGTCCCGCGCTTGGCGTTCGACCTCGTACAAACCGCTGATCGAGTGCAGGGCCTGTTCAGCCAGCTGGCTTTTATT  >  2:554488/1‑234                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAGGCCCTGCACTCGATCAGCGGTTTGTACGAGGTCGAACGCCAAGCGCGGGACATGAGTGATGAAGATCGTTGGCGAATACGTCAGGAAATGGCGGTGCCAATCCTCAAAACACTGCATGACTGGATGTTGGCCCAGCGCGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3971138‑3971345 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtagcgcGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTAGCCGTGGCTGATCCGTTGGGCACCAAGTCGCGCTGGGCCAACATCCAGTCATGCAGTGTTTTGAGGATTGGCACCGCCATTTCCTGACGTATTCGCCAACGATCTTCATCACTCATGTCCCGCGCTTGGCGTTCGACCTCGTACAAACCGCTGATCGAGTGCAGGGCCTGTTCAGCCAGCTGGCTTTTATT  <  AE015451/3971349‑3971117

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.