New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3984515	48 (0.830)	3 (0.050)	3/326	NT	5.7%	coding (122/441 nt)	PP_3512	conserved membrane protein of unknown function
	?	AE015451	= 3984581	54 (0.980)					coding (56/441 nt)	PP_3512	conserved membrane protein of unknown function

GATCACGAAGAAGCCCAGCTCCACCATGAATGCCTGCAGCAGCGAAATCTCCAGCATCCAAGCCGCCACCGGCAGGCACCACACCACCAGGCCGGCTTCGAAGCCAAGACCGTGCACGAAACGCGTACTGGCCTTCCAGTTGATGCGTTCGGTTTGCACCCAGCGATCGACCAGTACGTTGTAGACCATGTTCCACAGCATGGCGATCACCGACAGGGTCACCGCCAGCGTGCCCGCCGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3984274‑3984515 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgttgGCTATGAAGTTTTTGCGGTACTGCTGTGTGCGCCGCTGCTGTCCTGGATCATGGGCAAGTCGCTGGCAACGGCGGGCACGCTG  <  AE015451/3984581‑3984499                                                                                                                                                                                                                                                                                                                                       GATCACGAAGAAGCCCAGCTCCACCATGAATGCCTGCAGCAGCGAAATCTCCAGCATCCAAGCCGCCACCGGCAGGCACCACACCACCAGGCCGGCTTCGAAGCCAAGACCGTGCACGAAACGCGTACTGGCCTTCCAGTTGATGCGTTCGGTTTGCACCCAGCGATCGACCAGTACGTTGTAGACCATGTTCCACAGCATGGCGATCACCGACAGGGTCACCGCCAGCGTGCCCG                                                                                           >  1:857625/1‑236                    TCCACCATGAATGCCTGCAGCAGCGAAATCTCCAGCATCCAAGCCGCCACCGGCAGGCACCACACCACCAGGCCGGCTTCGAAGCCAAGACCGTGCACGAAACGCGTACTGGCCTTCCAGTTGATGCGTTCGGTTTGCACCCAGCGATCGACCAGTACGTTGTAGACCATGTTCCACAGCATGGCGATCACCGACAGGGTCACTGCCAGCGTGCCCGCCGT                                                                                       >  1:568384/1‑221                          ATGAATGCCTGCAGCAGCGAAATCTCCAGCATCCAAGCCGCCACCGGCAGGCACCACACCACCAGGCCGGCTTCGAAGCCAAGACCGTGCACGAAACGCGTACTGGCCTTCCAGTTGATGCGTTCGGTTTGCACCCAGCGATCGACCAGTACGTTGTAGACCATGTTCCACAGCATGGCGATCACCGACAGGGTCACCGCCACCCTGCCCGCCGTgccca                                                                                  >  2:20891/1‑215                                                                                                                    ACGAAACGCGTACTGGCCTTCCAGTTGATGCGTTCGGTTTGCACCCAGCGATCGACCAGTACGTTGTAGACCATGTTCCACAGCATGGCGATCACCGACAGGGTCACCGCCAGCGTGCCCGCCGTTGGCTATGAAGTTTTTGCGGTACTGCTGTGTGCGCCGCTGCTGTCCTGGATCATGGGCAAGTCGCTGGCAACGGCGcacacagca  >  1:504274/1‑201                                                                                                                                          gGTTGATGCGTTCGGTTTGCACCCAGCGATCGACCAGTACGTTGTAGACCATGTTCCACAGCATGGCGATCACCGACAGGGTCACCGCCAGCGTGCCCGCCGTTGGCTATGAAGTTTTTGCGGTACTGCTGTGTGCGCCGCTGCTGTCCTGGATCATGGGCAAGTCGCTGGCAAC               <  2:504271/174‑1                                                                                                                                           GTTGATGCGTTCGGTTTGCACCCAGCGATCGACCAGTACGTTGTAGACCATGTTCCACAGCATGGCGATCACCGACAGGGTCACCGCCAGCGTGCCCGCCGTTGGCTATGAAGTTTTTGCGGTACTGCTGTGTGCTCCGCTGCTG                                            >  1:166192/1‑145                                                                                                                                                                                                                                                                                                                                       GATCACGAAGAAGCCCAGCTCCACCATGAATGCCTGCAGCAGCGAAATCTCCAGCATCCAAGCCGCCACCGGCAGGCACCACACCACCAGGCCGGCTTCGAAGCCAAGACCGTGCACGAAACGCGTACTGGCCTTCCAGTTGATGCGTTCGGTTTGCACCCAGCGATCGACCAGTACGTTGTAGACCATGTTCCACAGCATGGCGATCACCGACAGGGTCACCGCCAGCGTGCCCGCCGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3984274‑3984515 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgttgGCTATGAAGTTTTTGCGGTACTGCTGTGTGCGCCGCTGCTGTCCTGGATCATGGGCAAGTCGCTGGCAACGGCGGGCACGCTG  <  AE015451/3984581‑3984499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.