New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4123700	49 (0.850)	3 (0.050)	3/326	NT	5.4%	coding (175/1746 nt)	PP_3628	Choline/carnitine/betaine transporter family protein
	?	AE015451	= 4123796	58 (1.060)					coding (271/1746 nt)	PP_3628	Choline/carnitine/betaine transporter family protein

ATACATGGCAAAGGAACACATCCCCGAAACACTCGATCTTGGCGTCACAGACCCCTCGAAAACCGCAGAAGCCCGCCAGGATCGACATTTCGAGGGCAAGCTTGACTGGATCGTCTTTGGTTTCACCAGCCTCCTGGCCATCGCCTTCGTGCTCTGGGGCTTCCTCAACCAGGCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4123522‑4123700 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccagccACAGCACGAACACCACGAAGAGGGAGGAGGTGAGCACGAAGAACCAGCCGAAATTGA  <  AE015451/4123796‑4123740                                                                                                                                                                                                                                              ATACATGGCAAAGGAACACATCCCCGAAACACTCGATCTTGGCGTCACAGACCCCTCGAAAACCGCAGAAGCCCGCCAGGATCGACATTTCGAGGGCAAGCTTGACTGGATCGTCTTTGGTTTCACCAGCCTCCTGGCCATCGCCTTCGTGCTCTGGGGCTTCCTCAACCAGGCCAGCCACAGCACGAACACCACGAAGAGGGAGGAGGTGAGCACGAAGAACCAGCCGAAATTGA  <  1:86804/236‑1          AAAGGAACACATCCCCGAAACACTCGATCTTGGCGTCACAGACCCCTCGAAAACCGCAGAAGCCCGCCAGGATCGACATTTCGAGGGCAAGCTTGACTGGATCGTCTTTGGTTTCACCAGCCTCCTGGCCATCGCCTTCGTGCTCTGGGGCTTCCTCAACCAGGCCAGC                                                            >  1:182498/1‑169                                                                  CAGAAGCCCGCCAGGATCGACATTTCGAGGGCAAGCTTGACTGGATCGTCTTTGGTTTCACCAGCCTCCTGGCCATCGCCTTCGTGCTCTGGGGCTTCCTCAACCAGGCCAGCCACAGCACGAACACCACGAAGAGGGAGGAGGTGAGCACGAAGAACCAGCCG         >  1:868360/1‑164                                                                  CAGAAGCCCGCCAGGATCGACATTTCGAGGGCAAGCTTGACTGGATCGTCTTTGGTTTCACCAGCCTCCTGGCCATCGCCTTCGTGCTCTGGGGCTTCCTCAACCAGGCCAGCCACAGCACGAACACCACGAAGAGGGAGGAGGTGAGCACGAAGAACCAGCCG         <  2:868357/164‑1                                                                                                                                                                                                                                              ATACATGGCAAAGGAACACATCCCCGAAACACTCGATCTTGGCGTCACAGACCCCTCGAAAACCGCAGAAGCCCGCCAGGATCGACATTTCGAGGGCAAGCTTGACTGGATCGTCTTTGGTTTCACCAGCCTCCTGGCCATCGCCTTCGTGCTCTGGGGCTTCCTCAACCAGGCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4123522‑4123700 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccagccACAGCACGAACACCACGAAGAGGGAGGAGGTGAGCACGAAGAACCAGCCGAAATTGA  <  AE015451/4123796‑4123740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.