New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4133059 =	40 (0.690)	4 (0.070)	4/326	NT	9.4%	coding (102/1206 nt)	PP_3636	putative Sulfonate ABC transporter, periplasmic sulfonate‑binding protein
	?	AE015451	4133114 =	39 (0.710)					coding (47/1206 nt)	PP_3636	putative Sulfonate ABC transporter, periplasmic sulfonate‑binding protein

ATGTGCATGGATGACTGCTGTTCCTCTTCTTCGCGTCGTGACTTTCTCAAGCTCGGCGCCATGCTCACTGCTGCCGGTGCATTGCCGTTGCTGTCGAGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4133160‑4133059 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagcttgAGAAAGTCACGACGCGAAGAAGAGGAACAGCAGTCATCCATGCACATGGACAGCCTCCGAGGGCAACGAGGTTGGGGTAGGTTCGACTGTGCGGCTTGCCCGCCGAAGGGTTTTGAGGATTTCAATACGCAAGGCGCCCAGTTCTTCGACCCGCTGCGTCCGTGGTTGCGGCAGGTCGATATGCCACTGCCCGAGGATGTGCGCTGGGAGGTTGCCCAGTAGCAGAACCCGGT  >  AE015451/4133114‑4133346                                                                                                                                                                                                                                                                                                                                                 ATGTGCATGGATGACTGCTGTTCCTCTTCTTCGCGTCGTGACTTTCTCAAGCTCGGCGCCATGCTCACTGCTGCCGGTGCATTGCCGTTGCTGTCGAGCTTGAGAAAGTCACGACGCGAAGAAGAGGAACAGCAGTCATCCATGCACATGGACAGCCTCCGAG                                                                                                                                                                              >  2:708483/1‑163                                   GTCGTGACTTTCTCAAGCTCGGCGCCATGCTCACTGCTGCCGGTGCATTGCCGTTGCTGTCGAGCTTGAGAAAGTCACGACGCGAAG                                                                                                                                                                                                                        <  2:428331/87‑1                                                                      GCTGCCGGTGCATTGCCGTTGCTGTCGAGCTTGAGAAAGTCACGACGCGAAGAAGAGGAACAGCAGTCATCCATGCACATGGACAGCCTCCGAGGGCAACGAGGTTGGGGTAGGTTCGACTGTGCGGCTTGCCCGCCGAAGGGTTTTGAGGATTTCAATACGCAAGGCGCCCAGTTCTTCGACCC                                                                                   >  1:534443/1‑185                                                                      GCTGCCGGTGCATTGCCGTTGCTGTCGAGCTTGAGAAAGTCACGACGCGAAGAAGAGGAACAGCAGTCATCCATGCACATGGACAGCCTCCGAGGGCAACGAGGTTGGGGTAGGTTCGACTGTGCGGCTTGCCCGCCGAAGGGTTTTGAGGATTTCAATACGCAAGGCGCCCAGTTCTTCGACCC                                                                                   <  2:534440/185‑1                                                                                              gCGAGCTTGAGAAAGTCACGACGCGAAGAAGAGGAACAGCAGTCATCCATGCACATGGACAGCCTCCGAGGGCAACGAGGTTGGGGTAGGTTCGACTGTGCGGCTTGCCCGCCGAAGGGTTTTGAGGATTTCAATACGCAAGGCGCCCAGTTCTTCGACCCGCTGCGTCCGTGGTTGCGGCAGGTCGATATGCCACTGCCCGAGGATGTGCGCTGGGAGGTTGCCCAGTAGCAG          <  1:873399/233‑1                                                                                                  GCTTGAGAAAGTCACGACGCGAAGAAGAGGAACAGCAGTCATCCATGCACATGGACAGCCTCCGAGGGCAACGAGGTTGGGGTAGGTTCGACTGTGCGGCTTGCCCGCCGAAGGGTTTTGAGGATTTCAATACGCAAGGCGCCCAGTTCTTCGACCCGCTGCGTCCGTGGTTGCGGCAGGTCGATATGCCACTGCCCGAGGATGTGCGCTGGGAGGTTGCCCAGTA              >  2:358210/1‑226                                                                                                    TTGAGAAAGTCACGACGCGAAGAAGAGGAACAGCAGTCATCCATGCACATGGACAGCCTCCGAGGGCAACGAGGTTGGGGTAGGTTCGACTGTGCGGCTTGCCCGCCGAAGGGTTTTGAGGATTTCAATACGCAAGGCGCCCAGTTCTTCGACCCGCTGCGTCCGTGGTTGCGGCAGGTCGATATGCCACTGCCCGAGGATGTGCGCTGGGAGGTTGCCCAGTAGCAGAACCCGGT  >  1:577860/1‑236                                                                                                    TTGAGAAAGTCACGACGCGAAGAAGAGGAACAGCAGTCATCCATGCACATGGACAGCCTCCGAGGGCAACGAGGTTGGGGTAGGTTCGACTGTGCGGCTTGCCCGCCGAAGGGTTTTGAGGATTTCAATACGCAAGGCGCCCAGTTCTTCGACCCGCTGCGTCCGTGGTTGCGGCAGGTCGATATGCCACTGCCCGAGGATGTGCGCTGGGAGGTTGCCCAG                >  1:832150/1‑222                                                                                                                                                                                                                                                                                                                                                 ATGTGCATGGATGACTGCTGTTCCTCTTCTTCGCGTCGTGACTTTCTCAAGCTCGGCGCCATGCTCACTGCTGCCGGTGCATTGCCGTTGCTGTCGAGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4133160‑4133059 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagcttgAGAAAGTCACGACGCGAAGAAGAGGAACAGCAGTCATCCATGCACATGGACAGCCTCCGAGGGCAACGAGGTTGGGGTAGGTTCGACTGTGCGGCTTGCCCGCCGAAGGGTTTTGAGGATTTCAATACGCAAGGCGCCCAGTTCTTCGACCCGCTGCGTCCGTGGTTGCGGCAGGTCGATATGCCACTGCCCGAGGATGTGCGCTGGGAGGTTGCCCAGTAGCAGAACCCGGT  >  AE015451/4133114‑4133346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.