New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4138582	53 (0.920)	3 (0.050)	3/328	NT	5.4%	coding (81/486 nt)	PP_3643	putative Oxidoreductase
	?	AE015451	= 4138588	55 (0.990)					coding (87/486 nt)	PP_3643	putative Oxidoreductase

ACACATCAACGATAAAAACCGCGGACCACCGCAGCCCTTCAGAGGTACTCCCGATGATCGACGCAACTGTCTACAAGAACGTTCTGGGCTCCTTCCCGTCCGGCGTTACCGTCATCACCACCCAGGACGACGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4138449‑4138582 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacgacCGAGCCGTCGTCGTCCTGGGTGGTGATGACGGTAACGCCGGACGGGAAGGAGCCCAGAACGTTCTTGTAGACAGTTGCGTCGATCATCGGGAGTACCTCTGAAGGGCTGCGGTGGTCCGCGGTTTTTATCGTTGATGTGTCTGATGGTATACCGTAATACCTATTTTGCAAGCGGAATTTTCAACCCTGCGTTTTCGCGATGAACGGCCCAAAGCC  <  AE015451/4138588‑4138373                                                                                                                                                                                                                                                                                                                                                                ACACATCAACGATAAAAACCGCGGACCACCGCAGCCCTTCAGAGGTACTCCCGATGATCGACGCAACTGTCTACAAGAACGTTCTGGGCTCCTTCCCGTCCGGCGTTACCGTCATCACCACCCAGGACG                                                                                                                                                                                                                               >  2:717067/1‑129                                                                                          TCCTTCCCGTCCGGCGTTACCGTCATCACCACCCAGGACGACGACCGAGCCGTCGTCGTCCTGGGTGGTGATGACGGTAACGCCGGACGGGAAGGAGCCCAGAACGTTCTTGTAGACAGTTGCGTCGA                                                                                                                                       <  1:1072718/128‑1                                                                                          TCCTTCCCGTCCGGCGTTACCGTCATCACCACCCAGGACGACGACCGAGCCGTCGTCGTCCTGGGTGGTGATGACGGTAACGCCGGACGGGAAGGAGCCCAGAACGTTCTTGTAGACAGTTGCGTCGA                                                                                                                                       >  2:1072715/1‑128                                                                                                           TACCGTCATCACCACCCAGGACGACGACCGAGCCGTCGTCGTCCTGGGTGGTGATGACGGTAACGCCGGACGG                                                                                                                                                                             >  2:349947/1‑73                                                                                                                                      CCGAGCCGTCGTCGTCCTGGGTGGTGATGACGGTAACGCCGGACGGGAAGGAGCCCAGAACGTTCTTGTAGACAGTTGCGTCGATCATCGGGAGTACCTCTGAAGGGCTGCGGTGGTCCGCGGTTTTTATCGTTGATGTGTCTGATGGTATACCGTAATACCTATTTTGCAAGCGGAATTTTCAACCCTGCGTTTTCGCGATGAACGGCCCAAAGCC  >  2:418742/1‑217                                                                                                                                      CCGAGCCGTCGTCGTCCTGGGTGGTGATGACGGTAACGCCGGACGGGAAGGAGCCCAGA                                                                                                                                                                >  1:628514/1‑59                                                                                                                                      CCGAGCCGTCGTCGTCCTGGGTGGTGATGACGGTAACGCCGGACGGGAAGGAGCCCAGA                                                                                                                                                                <  2:628511/59‑1                                                                                                                                                                                                                                                                                                                                                                ACACATCAACGATAAAAACCGCGGACCACCGCAGCCCTTCAGAGGTACTCCCGATGATCGACGCAACTGTCTACAAGAACGTTCTGGGCTCCTTCCCGTCCGGCGTTACCGTCATCACCACCCAGGACGACGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4138449‑4138582 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacgacCGAGCCGTCGTCGTCCTGGGTGGTGATGACGGTAACGCCGGACGGGAAGGAGCCCAGAACGTTCTTGTAGACAGTTGCGTCGATCATCGGGAGTACCTCTGAAGGGCTGCGGTGGTCCGCGGTTTTTATCGTTGATGTGTCTGATGGTATACCGTAATACCTATTTTGCAAGCGGAATTTTCAACCCTGCGTTTTCGCGATGAACGGCCCAAAGCC  <  AE015451/4138588‑4138373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.