New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4526692	59 (1.020)	4 (0.070)	4/332	NT	6.0%	coding (502/627 nt)	PP_4015	HflD‑like high frequency lysogenization protein
	?	AE015451	= 4526735	68 (1.220)					coding (545/627 nt)	PP_4015	HflD‑like high frequency lysogenization protein

GTCGATGCTGGGCCTGGAGCGCCAGCTGAACAAACGTGGCGACCTGCTGGACACCATCGGCAACCGCCTGCCGCAAATCCAGTCGCAGGCCGAGCATTTCGGCCTGGTTCACGAAAACGTCATCGCTTCCAGTGGAGCCTTGTATCAGGACACCCTGAGCACCTTGCGCCAGCGCATCCAGGTGCATGGCGACATGCGCTTCCTGCAGCAGCCCAACAATGCCTCGAAGATCCGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4526454‑4526692 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccAGCTGCCGCCACAGTCGCGCGGCGCGGATGCCGGCCAGCAGCAGGGCGCGGATCTTCGAGGCATTGTTGGGCTGCTGCAGGAAGCGCATGTCGCCATGCACCTGGATGCGCTGGCGCAAGGTGCTCAGGGTGTCCTGATACAAGGCTCCACTGGAAGCGATGACGTTTTCGTGAACCAGGCCGAAATGCTCGGCCTGCGACTGGATTTGCGGCAGGCGGTTGCCG  <  AE015451/4526735‑4526511                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GTCGATGCTGGGCCTGGAGCGCCAGCTGAACAAACGTGGCGACCTGCTGGACACCATCGGCAACCGCCTGCCGCAAATCCAGTCGCAGGCCGAGCATTTCGGCCTGGTTCACGAAAACGTCATCGCTTCCAGTGGAGCCTTGTATCAGGACACCCTGAGCACCTTGCGCCAGCGCATCCAGGTGCATGGCGACATGCGCTTCCTGCAGCAGCCCAACAATGCCTCGAAGATCCGCG                                                                                                                                                                                                                                      >  1:1020191/1‑236                                                                                                                                                                                              CGACATGCGCTTCCTGCAGCAGCCCAACAATGCCTCGAAGATCCGCGCCCAGCTGCCGCCACAGTCGCGCGGCGCGGATGCCGGCCAGCAGCAGGGCGCGGATCTTCGAGGCATTGTTGGGCTGCTGCAGGAAGCGCATGTCGCCATGCACCT                                                                                                                            >  2:861886/1‑153                                                                                                                                                                                                           CTGCAGCAGCCCAACAATGCCTCGAAGATCCGCGCCCAGCTGCCGCCACAGTCGCGCGGCGCGGATGCAGGCCAGCAGCAGGGCGCGGATCTTCGAGGCATTGTTGGGCTGCGGCAGGAAGCGCATG                                                                                                                                         >  1:92484/1‑127                                                                                                                                                                                                                       AACAATGCCTCGAAGATCCGCGCCCAGCTGCCGCCACAGTCGCGCGGCGCGGATGCCGGCCAGCAGCAGGGCGCGGATCTTCGAGGCATTGTTGGGCTGCTGCAGGAAGCGCATGTCGCCATGCACCTGGATGCGCTGGCGCAAGGTGCTCAGGGTGTCCTGATACAAGGCTCCACTGGAAGCGATGACGTTTTCGTGAACCAGGCCGAAATGCTCGGCCTGCGACTGGATTTGCG                >  1:466919/1‑236                                                                                                                                                                                                                                 CGAAGATCCGCGCCCAGCTGCCGCCACAGTCGCGCGGCGCGGATGCCGGCCAGCAGCAGGGCGCGGATCTTCGAGGCATTGTTGGGCTGCTGCAGGAAGCGCATGTCGCCATGCACCTGGATGCGCTGGCGCAAGGTGCTCAGGGTGTCCTGATACAAGGCTCCACTGGAAGCGATGACGTTTTCGTGAACCAGGCCGAAATGCTCGGCCTGCGACTGGATTTGCGGCAGGC          >  2:861594/1‑232                                                                                                                                                                                                                                               CAGCTGCCGCCACAGTCGCGCGGCGCGGATGCCGGCCAGCAGCAGGGCGCGGATCTTCGAGGCATTGTTGGGCTGCTGCAGGAAGCGCATGTCGCCATGCACCTGGATGCGCTGGCGCAAGGTGCTCAGGGTGTCCTGATACAAGGCTCCACTGGAAGCGATGACGTTTTCGTGAACCAGGCCGAAATGCTCGGCCTGCGACTGGATTTGCGGCAGGCGGTTGCCG  <  2:633886/226‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GTCGATGCTGGGCCTGGAGCGCCAGCTGAACAAACGTGGCGACCTGCTGGACACCATCGGCAACCGCCTGCCGCAAATCCAGTCGCAGGCCGAGCATTTCGGCCTGGTTCACGAAAACGTCATCGCTTCCAGTGGAGCCTTGTATCAGGACACCCTGAGCACCTTGCGCCAGCGCATCCAGGTGCATGGCGACATGCGCTTCCTGCAGCAGCCCAACAATGCCTCGAAGATCCGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4526454‑4526692 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccAGCTGCCGCCACAGTCGCGCGGCGCGGATGCCGGCCAGCAGCAGGGCGCGGATCTTCGAGGCATTGTTGGGCTGCTGCAGGAAGCGCATGTCGCCATGCACCTGGATGCGCTGGCGCAAGGTGCTCAGGGTGTCCTGATACAAGGCTCCACTGGAAGCGATGACGTTTTCGTGAACCAGGCCGAAATGCTCGGCCTGCGACTGGATTTGCGGCAGGCGGTTGCCG  <  AE015451/4526735‑4526511

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.