New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4653677	75 (1.300)	4 (0.070)	3/322	NT	5.4%	coding (155/1326 nt)	aceA	isocitrate lyase
	?	AE015451	= 4653754	70 (1.290)					coding (232/1326 nt)	aceA	isocitrate lyase

ACAGCCGCCAGGCACCTGATCTGCTCCGAGCATCAGCACAATTAACCCAAGATCGATGCGACGAGGTTTATTTCCATGGCACTGACACGCGAACAGCAAATTGCAGCCCTCGAGAAAGACTGGGCCGAAAACCCGCGCTGGAAAGGCGTGACCCGTACCTACACCGCCGCTGATGTCGTTCGCCTGCGTGGCTCCGTGCAACCTGAGCACACCTTTGCGCGTCAGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4653448‑4653677 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcagggcgcCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCCCTGACGCGCAAAGGTGTGCTCAGGTTGCACGGAGCCACGCAGGCGAACGACATCAGCGGCGGTGTAGGTACGGGTCACGCCTTTCCAGCGCGGGTTTTCGGCCCAGTCTTTCTCGAGGGCTGCAATTTGCTGTTCGCGTGTCAGTG  <  AE015451/4653754‑4653527                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACAGCCGCCAGGCACCTGATCTGCTCCGAGCATCAGCACAATTAACCCAAGATCGATGCGACGAGGTTTATTTCCATGGCACTGACACGCGAACAGCAAATTGCAGCCCTCGAGAAAGACTGGGCCGAAAACCCGCGCTGGAAAGGCGTGACCCGTACCTACACCGCCGCTGATGTCGTTCGCCTGCGTGGCTCCGTGCAACCTGAGCACACCTTTGCGCGTCAGGGC                                                                                                                                                                                                                                        >  1:119965/1‑228                                                                                                    ATTGCAGCCCTCGAGAAAGACTGGGCCGAAAACCCGCGCTGGAAAGGCGTGACCCGTACCTACACCGCCGCTGATGTCGTTCGCCTGCGTGGCTCCGGGCACCCTGAGCACACCTCTGCGCGg                                                                                                                                                                                                                                              >  2:299610/1‑122                                                                                                                                                                         GCTGATGTCGTTCGCCTGCGTGGCTCCGTGCAACCTGAGCACACCTTTGCGCGTCAGGGCGCCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCCCTGACGCGCAAAGGTGTGCTCAGGTTGCACGGAGCCACGCAGGCGAACGACATCAGCGGCGGTGTAGGTACGGGT                                                                         >  1:362959/1‑219                                                                                                                                                                          CTGATGTCGTTCGCCTGCGTGGCTCCGTGCAACCTGAGCACACCTTTGCGCGTCAGGGCGCCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCCCTGACGCGCAAAGGTGTGCTCTGGTTGCACG                                                                                                                     >  2:694975/1‑174                                                                                                                                                                          CTGATGTCGTTCGCCTGCGTGGCTCCGTGCAACCTGAGCACACCTTTGCGCGTCAGGGCGCCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGGTTTTCTGCGCCCTGACGCGCAAAGGTGTGCTCAGGTTGCGCGGA                                                                                                                   >  1:797787/1‑176                                                                                                                                                                                        CTGCGTGGCTCCGTGCAACCTGAGCACACCTTTGCGCGTCAGGGCGCCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGTTGTTCTGCGCCCTGACGCGCAAAGGTG                                                                                                                                    >  2:438080/1‑145                                                                                                                                                                                                                        TGCGCGTCAGGGCGCCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCCCTGACGCGCAAAGGTGTGCTCAGGTTGCACGGAGCCACGCAGGCGAACGACATCAGCGGCG                                                                                       >  2:336035/1‑158                                                                                                                                                                                                                               CAGGGCGCCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCCCTGACGCGCAAAGGTGTGCTCAGGTTGCACGGAGCCACGCAGGCGAACGACATCAGCGGCGGTGTAGGTACGGGTCACGCCTTTCCAGCGCGGGTTTTCGGCCCAGTCTTTCTCGAGGGCTGCAATTTGCTGTTC             >  1:576527/1‑225                                                                                                                                                                                                                               CAGGGCGCCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCCCTGACGCGCAAAGGTGTGCTCAGGTTGCACGGAGCCACGCAGGCGAACGACATCAGCGGCGGTGTAGGTACGGGTCACGCCTTTCCAGCGCGGGTTTTCGGCCCAGTCTTTCTCGAGGGCTGCAATTTGCTGTTC             <  2:576524/225‑1                                                                                                                                                                                                                               CAGGGCGCCCATGCAGTTGACGAAAGCTTTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCACTGACGCGCAAAGGTGTGCTCAGGTTGCACGGAGCCACGCAGGCGAACGACATCAGCAGCGGTGTAGGTACGGGTCACGCCTTTCCAGCGCGGGTT                                                    >  2:666180/1‑186                                                                                                                                                                                                                                 GGGCGCCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCCCTGACGCGCAAAGGTGTGCTCAGGTTGCACGGAGCCACGCAGGCGAACGACATCAGCGGCGGTGTAGGTACGGGTCACGCCTTTCCAGCGCGGGTTTTCGGCCCAGTCTTTCTCGAGGGCTGCAATTTGCTGTTCGCGTGTCAGTG  <  2:1024111/234‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACAGCCGCCAGGCACCTGATCTGCTCCGAGCATCAGCACAATTAACCCAAGATCGATGCGACGAGGTTTATTTCCATGGCACTGACACGCGAACAGCAAATTGCAGCCCTCGAGAAAGACTGGGCCGAAAACCCGCGCTGGAAAGGCGTGACCCGTACCTACACCGCCGCTGATGTCGTTCGCCTGCGTGGCTCCGTGCAACCTGAGCACACCTTTGCGCGTCAGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4653448‑4653677 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcagggcgcCCATGCAGTTGACGAAATCTTTGTCGGGGCGGAAGGACGGGTGGGCACCTTCGGTGACCAGCTTCCACAGTTTTTCTGCGCCCTGACGCGCAAAGGTGTGCTCAGGTTGCACGGAGCCACGCAGGCGAACGACATCAGCGGCGGTGTAGGTACGGGTCACGCCTTTCCAGCGCGGGTTTTCGGCCCAGTCTTTCTCGAGGGCTGCAATTTGCTGTTCGCGTGTCAGTG  <  AE015451/4653754‑4653527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.