New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4832748	66 (1.140)	4 (0.070)	4/330	NT	6.0%	coding (443/1014 nt)	pvdY	hydroxyproline acetylase
	?	AE015451	= 4832762	62 (1.110)					coding (429/1014 nt)	pvdY	hydroxyproline acetylase

GTAGGCAAACGGCTCGTCATCGAAACAACCGATCAACGTCAACGTATGCGGGTCGGCTTCGAGCTTGGCCAAGTATTCGCGGTGCTGCGCCAGCGTGCCACCCTCCTGCCAGAACGCCTCCACGCGAGGGTTGTTCTGCCAGCGGTTGAAACGCTCCAGGTCATGCTCGATCTCCAGGGTACGCAGCGATACCCAACTGCCCAAGCGCGCATCGAAGCGCCGGTACACTTCGCCCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4832510‑4832748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgCCGGGCGCCCAAGCCGCGGGGCGAAGTGTACCGGCGCTTCGATGCGCGCTTGGGCAGTTGGGTATCGCTGCGTACCCTGGAGATCGAGCATGACCTGGAGCGTTTCAACCGCTGGCAGAACAACCCTCGCGTGGAGGCGTTCTGGCAGGAGGGTGGCACGCTGGCGCAGCACCGCGAATACTTGGCCAAGCTCGAAGCCGACCCGCATACGTTGACGTTGATCGGTTGTTTC  <  AE015451/4832762‑4832531                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTAGGCAAACGGCTCGTCATCGAAACAACCGATCAACGTCAACGTATGCGGGTCGGCTTCGAGCTTGGCCAAGTATTCGCGGTGCTGCGCCAGCGTGCCACCCTCCTGCCAGAACGCCTCCACGCGAGGGTTGTTCTGCCAGCGGTTGAAACGCTCCAGGTCATGCTCGATCTCCAGGGTACGCAGCGATACCCAACTGCCCAAGCGCGCATCGAAGCGCCGGTACACTTCGCCC                                                                                                                                                                                                                                              >  1:836122/1‑235                                    ACGTCAACGTATGCGGGTCGGCTTCGAGCTTGGCCAAGTATTCGCGGTGCTGCGCCAGCGTGCCACCCTCCTGCCAGAACGCCTCCACGCGAGGGTTGTTCTGCCAGCGGTTGAAACGCTCCAGGTCATGCTCGATCTCCAGGGTACGCAGCGATACCCAACTGCCCAAGCGCGCATCGAAGCGCCGGTACACTTCGCCCCGCG                                                                                                                                                                                                                                          <  2:836119/204‑1                                     CGTCAACGTATGCGGGTCGGCTTCGAGCTTGGCCAAGTATTCGCGGTGCTGCGCCAGCGTGCCACCCTCCTGCCAGAACGCCTCCACGCGAGGGTTGTTCTGCCAGCGGTTGAAACGCTCCAGGTCATGCTCGATCTCCAGGGTACGCAGCGATACCCAACTGCCCAAGCGCGCATCGAAGCGCCGGTACACTTCGCCCCGC                                                                                                                                                                                                                                           >  2:598082/1‑202                                                                                                                                                                                         AGCGATACCCAACTGCCCAAGCGCGCATCGAAGCGGCGGTACACTTCGCC                                                                                                                                                                                                                                               >  2:413098/1‑50                                                                                                                                                                                               ACCCAACTGCCCAAGCGCGCATCGAAGCGCCGGTACACTTCGCCCCGCGCCGGGCGCCCAAGCCGCGGGGCGAAGTGTACCGGCGCTTCGATGCGCGCTTGGGCAGTTGGGTATCGCTGCGTACCCTGGAGATCGAGCATGACCTGGAGCGTTTCAACCGCTGGCAGAACAACCCTCGCGT                                                                                                      >  2:942337/1‑181                                                                                                                                                                                                                CGCATCGAAGCGCCGGTACACTTCGCCCCGCGCCGGGCGCCCAAGCCGCGGGGCGAAGTGTACCGGCGCTTCGATGCGCGCTTGGGCAGTTGGGTATCGCTGCGTACCCTGGAGATCGAGCATGACCTGGAGCGTTTCAACCGCTGGCAGAACAACCCTCGCGTGGAGGC                                                                                                >  2:691157/1‑170                                                                                                                                                                                                                     CGAAGCGCCGGTACACTTCGCCCCGCGCCGGGCGCCCAAGCCGCGGGGCGAAGTGTACAGGCGCTTCGATGCGCGGTTGGGCAGTTGGGTATC                                                                                                                                                                        >  2:894561/1‑93                                                                                                                                                                                                                                  CACTTCGCCCCGCGCCGGGCGCCCAAGCCGCGGGGCGAAGTGTACCGGCGCTTCGATGCGCGCTTGGGCAGTTGGGTATCGCTGCGTACCCTGGAGATCGAGCATGACCTGGAGCGTTTCAACCGCTGGCAGAACAACCCTCGCGTGGAGGCGTTCTGGCAGGAGGGTGGCACGCTGGCGCAGCACCGCGAATACTTGGCCAAGCTCGAAGCCGACCCGC                            >  2:953450/1‑220                                                                                                                                                                                                                                             GCGCCGGGCGCCCAAGCCGCGGGGCGAAGTGTACCGGCGCTTCGATGCGCGCTTGGGCAGTTGGGTATCGCTGCGTACCCTGGAGATCGAGCATGACCTGGAGCGTTTCAACCGCTGGCAGAACAACCCTCGCGTGGAGGCGTTCTGGCAGGAGGGTGGCACGCTGGCGCAGCACCGCGAATACTTGGCCAAGCTCGAAGCCGACCCGCATACGTTGACGTTGATCGGTTGTTTC  >  1:458900/1‑235                                                                                                                                                                                                                                             GCGCCGGGCGCCCAAGCCGCGGGGCGAAGTGTACCGGCGCTTCGATGCGCGCTTGGGCAGTTGGGTATCGCTGCGTACCCTGGAGATCGAGCATGACCTGGAGCGTTTCAACCGCTGGCAGAACAACCCTCGCGTGGAGGCGTTCTGGCAGGAGGGTGGCACGCTG                                                                       >  2:724968/1‑166                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTAGGCAAACGGCTCGTCATCGAAACAACCGATCAACGTCAACGTATGCGGGTCGGCTTCGAGCTTGGCCAAGTATTCGCGGTGCTGCGCCAGCGTGCCACCCTCCTGCCAGAACGCCTCCACGCGAGGGTTGTTCTGCCAGCGGTTGAAACGCTCCAGGTCATGCTCGATCTCCAGGGTACGCAGCGATACCCAACTGCCCAAGCGCGCATCGAAGCGCCGGTACACTTCGCCCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4832510‑4832748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgCCGGGCGCCCAAGCCGCGGGGCGAAGTGTACCGGCGCTTCGATGCGCGCTTGGGCAGTTGGGTATCGCTGCGTACCCTGGAGATCGAGCATGACCTGGAGCGTTTCAACCGCTGGCAGAACAACCCTCGCGTGGAGGCGTTCTGGCAGGAGGGTGGCACGCTGGCGCAGCACCGCGAATACTTGGCCAAGCTCGAAGCCGACCCGCATACGTTGACGTTGATCGGTTGTTTC  <  AE015451/4832762‑4832531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.