New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 488326656 (0.970)6 (0.110) 6/326 NT 9.8% intergenic (+68/‑286) PP_4291/PP_4293 conserved exported protein of unknown function/conserved exported protein of unknown function
?AE015451 = 4883277 57 (1.040)intergenic (+79/‑275) PP_4291/PP_4293 conserved exported protein of unknown function/conserved exported protein of unknown function

GCACTTCAACCCGCAGGTCAAATACGACCTGGGCAAGGCGCTGAACCTGGGCGCCAAGCAGCTCTACGTCGGCTTTGAATACAGCTACTGGAAAGACAAGTACGGCATTGACAGCCGTGGCAACCTGGACAGCAACCAAAGCGTCGCCAGTGCGCTGATCAAGGTGCACTTCTAGGAAGTTGACCAAACGCACAAGTTTGAATCACCCCGCTCCAGGACGGAGCACTTGAGGCGCGGCGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4883024‑4883266
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgcaGATTACTGGCTTGCGCGCCGCGCCTCAAGTGCTCCGTCCTGGAGCGGGGTGATTCAAACTTGTGCGTTTGGTCAACTTCCTAGAAGTGCACCTTGATCAGCGCACTGGCGACGCTTTGGTTGCTGTCCAGGTTGCCACGGCTGTCAATGCCGTACTTGTCTTTCCAGTAGCTGTATTCAAAGCCGACGTAGAGCTGCTTGGCGCCCAGGTTCAGCGCCTTGCCCAGGTCG  <  AE015451/4883277‑4883048
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
GCACTTCAACCCGCAGGTCAAATACGACCTGGGCAAGGCGCTGAACCTGGGCGCCAAGCAGCTCTACGTCGGCTTTGAATACAGCTACTGGAAAGACAAGTACGGCATTGACAGCCGTGGCAACCTGGACAGCAACCAAAGCGTCGCCAGTGCGCTGATCAAGGTGCACTTCTAGGAAGTTGACCAAACGCACAAGTTTGAATCACCCCGCTCCAGGACGGAGCACTTGAGGCGCG                                                                                                                                                                                                                                               >  1:853908/1‑236
  acgTCAACCCGCAGGTCAAATACGACCTGGGCAAGGCGCTGAACCTGGGCGCCAAGCAGCTCTACGTCGGCTTTGAATACAGCTACTGGAAAGACAAGTACGGCATTGACAGCCGTGGCAACCTGGACAGCAACCAAAGCGTCGCCAGTGCGCTGATCAAGGTGCACTTCTAGGAAGTTGACCAAACGCACAAGTTTGAATCACCCCGCTCCAGGACGGAGCACTTGAGGCGCGGC                                                                                                                                                                                                                                             <  1:133329/233‑1
    TTCAACCCGCAGGTCAAATACGACCTGGGCAAGGCGCTGAACCTGGGCGCCAAGCAGCTCTACGTCGGCTTTGAATACAGCTACTGGAAAGACAAGTACGGCATTGACAGCCGTGGCAACCTGGACAGCAACCAAAGCGTCGCCAGTGCGCTGATCAAGGTGCACTTCTAGGAAGATGACCAAACGCACAAGTTTGAATCACCCCGCTCCAGGACGGAGCACTTGAGGCGCGGCGC                                                                                                                                                                                                                                           <  1:556732/236‑1
     TCAACCCGCAGGTCAAATACGACCTGGGCAAGGCGCTGAACCTGGGCGCCAAGCAGCTCTACGTCGGCTTTGAATACAGCTACTGGAAAGACAAGTACGGCATTGACAGCCGTGGCAACCTGGACAGCAACCAAAGCGTCGCCAGTGCGCTGATCAAGGTGCACTTCTAGGAAGTTGACCAAACGCACAAGTTTGAATCACCCCGCTCCAGGACGGAGCACTTGAGGCGCGGCGCG                                                                                                                                                                                                                                          >  1:351107/1‑236
                                        CTGAACCTGGGCGCCAAGCAGCTCTACGTCGGCTTTGAATACAGCTACTGGAAAGACAAGTACGGCATTGACAGCCGTGGCAACCTGGACAGCAACCAAAGCGTCGCCAGTGCGCTGATCAAGGTGCACTTCTAGGAAGTTGACCAAACGCACAAGTTTGAATCACCCCGCTCCAGGACGGAGCACTTGAGGCGCGGCGC                                                                                                                                                                                                                                           <  2:657147/200‑1
                                                        AGCAGCTCTACGTCGGCTTTGAATACAGCTACTGGAAAGACAAGTACGGCATTGACAGCCGTGGCAACCTGGACAGCAACCAAAGCGTCGCCAGTGCGCTGATCAAGGTGCACTTCTAGGAAGTTGACCAAACGCACAAGTTTGAATCACCCCGCTCCAGGACGGAGCACTTGAGGCGCGG                                                                                                                                                                                                                                              >  2:297153/1‑181
                                                           acCTCTCCGTCGGCTTTGAATACATCTACGGGAAAGACAAGTCCGGCATGGACAGCCGTGGCAACCTGGACAGCAACCAAAGCGTCGCCAGTGCGCTGATCAAGGTGCACTTCTAGGAAGTTGACCAACCGCACAAGTTTGAATCACCCCGCTCCAGGACGGAGCACTTGAGGCGCGGC                                                                                                                                                                                                                                             <  2:152993/177‑1
                                                                                                       GGCATTGACAGCCGTGGCAACCTGGACAGCAACCTAAGCGTCGCCAGTGCGCTGATCAAGGTGCACTTCTAGGAAGTTGACCAAACGCACAAGTTTGAATCACCCCGCTCCAGGACGGAGCACTTGAGGCGCGGC                                                                                                                                                                                                                                             <  2:1023840/135‑1
                                                                                                                                                                          TCTAGGAAGTTGACCAAACGCACAAGTTTGAATCACCCCGCTCCAGGACGGAGCACTTGAGGCGCGGCGCGCAGATTACTGGCTTGCGCGCCGCGCCTCAAGTGCTCCGTCCTGGAGCGGGGTGATTCAAACTTGTGCGTTTGGTCAACTTCCTAGAAGTGCACCTTGATCAGCGCACTGGCGACGCTTTGGTTGCTGTCCAGGTT                                                                                                   >  2:752697/1‑206
                                                                                                                                                                                 AGTTGACCAAACGCACAAGTTTGAATCACCCCGCTCCAGGACGGAGCACTTGAGGCGCGGCGCGCAGATTACTGGCTTGCGC                                                                                                                                                                                                                        >  2:798355/1‑82
                                                                                                                                                                                 AGTTGACCAAACGCACAAGTTTGAATCACCCCGCTCCAGGACGGAGCACTTGAGGCGCGGCGCGCAGATTACTGGCTTGCGC                                                                                                                                                                                                                        <  1:798358/82‑1
                                                                                                                                                                                        CAAACGCACAAGTTTGAATCACCCCGCTCCAGGACGGAGCACTTGAGGCGCGGCGCGCAGATTACTGGCTTGCGCGCCGCGCCTCAAGTGCTCCGTCCTGGAGCGGGGTGATTCAAACTTGTGCGTTTGGTCAACTTCCTAGAAGTGCACCTTGATCAGCGCACTGGC                                                                                                                           >  1:525501/1‑168
                                                                                                                                                                                                                         ACGGAGCACTTGAGGCGCGGCGCGCAGATTACTGGCTTGCGCGCCGCGCCTCAAGTGCTCCGTCCTGGAGCGGGGTGATTCAAACTTGTGCGTTTGGTCAACTTCCTAGAAGTGCACCTTGATCAG                                                                                                                                    >  2:1060712/1‑126
                                                                                                                                                                                                                                ACTTGAGGCGCGGCGCGCAGGTTACTGGCTTGCGCGCCGCGCCTCAAGTGCTCCGTCCTGGAGCGGGGTGATTCACACTTGTGCGTTTGGTCACCT                                                                                                                                                           >  2:709506/1‑96
                                                                                                                                                                                                                                             CGCGCAGATTACTGGCTTGCGCGCCGCGCCTCAAGTGCTCCGTCCTGGAGCGGGGTGATTCAAACTTGTGCGTTTGGTCAACTTCCTAGAAGTGCACCTTGATCAGCGCACTG                                                                                                                             <  2:11529/113‑1
                                                                                                                                                                                                                                                GCAGATTACTGGCTTGCGCGCCGCGCCTCAAGTGCTCCGTCCTGGAGCGGGGTGATTCAAACTTGTGCGTTTGGTCAACTTCCTAGAAGTGCACCTTGATCAGCGCACTGGCGACGCTTTGGTTGCTGTCCAGGTTGCCACGGCTGTCAATGCCGTACTTGTCTTTCCAGTAGCTGTATTCA                                                     >  1:480989/1‑182
                                                                                                                                                                                                                                                GCAGATTACTGGCTTGCGCGCCGCGCCTCAAGTGCTCCGTCCTGGAGCGGGGTGATTCAAACTTGTGCGTTTGGTCAACTTCCTAGAAGTGCACCTTGATCAGCGCACTGGCGA                                                                                                                         >  2:536929/1‑114
                                                                                                                                                                                                                                                GCAGATTACTGGCTTGCGCGCCGCGCCTCAAGTGCTCCGTCCTGGAGCGGGGTGATTCAAACTTGTGCGTTTGGTCAACTTCCTAGAAGTGCACCTTAATCAGCGCACTGGCGACGCTTTGGTTGCTGTCCAGGTTGCCACGGCTGTCAATGCCGTACTTGTCTTTCCAGTAGCTGTATTCAAAGCCGACGTAGAGCTGCTTGGCGCCCAGGTTCAGCGCCTTGCCCAGGTCG  >  2:581892/1‑233
                                                                                                                                                                                                                                                GCAGATTACTGGCTTGCGCGCCGCGCCTCAAGGGCTCCGTCCTGGAGCGGGGTGGTTCAAACTTGTGCGTTTGGTCAACTTCCTAG                                                                                                                                                     >  1:242788/1‑86
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
GCACTTCAACCCGCAGGTCAAATACGACCTGGGCAAGGCGCTGAACCTGGGCGCCAAGCAGCTCTACGTCGGCTTTGAATACAGCTACTGGAAAGACAAGTACGGCATTGACAGCCGTGGCAACCTGGACAGCAACCAAAGCGTCGCCAGTGCGCTGATCAAGGTGCACTTCTAGGAAGTTGACCAAACGCACAAGTTTGAATCACCCCGCTCCAGGACGGAGCACTTGAGGCGCGGCGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4883024‑4883266
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgcaGATTACTGGCTTGCGCGCCGCGCCTCAAGTGCTCCGTCCTGGAGCGGGGTGATTCAAACTTGTGCGTTTGGTCAACTTCCTAGAAGTGCACCTTGATCAGCGCACTGGCGACGCTTTGGTTGCTGTCCAGGTTGCCACGGCTGTCAATGCCGTACTTGTCTTTCCAGTAGCTGTATTCAAAGCCGACGTAGAGCTGCTTGGCGCCCAGGTTCAGCGCCTTGCCCAGGTCG  <  AE015451/4883277‑4883048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.