New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5160627 =	59 (1.020)	3 (0.050)	3/330	NT	5.0%	coding (428/1212 nt)	PP_4543	conserved protein of unknown function
	?	AE015451	5160650 =	57 (1.020)					coding (405/1212 nt)	PP_4543	conserved protein of unknown function

GCAATGGAGGACAGCGGCAGCGTGGCGCGCAACACGGGCTGGGCCGCCGAGCACCTGGTGCTGGAGCGTGACGGACAGGTACGGGCGCTGTTGCCCGCGTACCGCAAGTGGCACTCGTTTGGCGAGTATGTGTTCGATCATGGTTGGGCCGATGCTTGTGAGCGGGCCGGTATCGCCTACTACCCAAAACTGCTTGGCGCTGTGCCGTTCAGCCCGGTCAGCGGCCCACGGCTGCTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5160865‑5160627 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgacCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCGGCCCAACCATGATCGAACACATACTCGCCAAACGAGTGCCACTTGCGGTACGCGGGCAACAGCGCCCGTACCTGTCCGTCACGCTCCAGCACCAGGTGCTCGGCGGCCCAGCCCGTGTTGCGCGCCACGCTGCCGCTGTCCTCCATTGCACTGAGAAAAGCATGGCG  >  AE015451/5160650‑5160883                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCAATGGAGGACAGCGGCAGCGTGGCGCGCAACACGGGCTGGGCCGCCGAGCACCTGGTGCTGGAGCGTGACGGACAGGTACGGGCGCTGTTGCCCGCGTACCGCAAGTGGCACTCGTTTGGCGAGTATGTGTTCGATCATGGTTGGGCCGATGCTTGTGAGCGGGCCGGTATCGCCTACTACCCAAAACTGCTTGGCGCTGTGCCGTTCAGCCCGGTCAGCGGCCCACGGCTGCT                                                                                                                                                                                                                                               >  1:566026/1‑236   AATGGAGGACAGCGGCAGCGTGGCGCGCAACACGGGCTGGGCCGCCGAGCACCTGGTGCTGGAGCGTGACGGACAGGTACGGGCGCTGTTGCCCGCGTACCGCAAGTGGCACTCGTTTGGCGAGTATGTGTTCGATCATGGTTGGGCCGATGCTTGTGAGCGGGCCGGTATCGCCTACTACCCAAAACTGCTTGGCGCTGTGCCGTTCAGCCCGGTCAGCGGCCCACGGCTGCTG                                                                                                                                                                                                                                              >  1:812019/1‑235                                                                        CGGACAGGTACGGGCGCTGTTGCCCGCGTACCGCAAGTGGCACTCGTTTGGCGAGTATGTGTTCGATCATGGTTGGGCCGATGCTTGTGAGCGGGCCGGTATCGCCTACTACCCAAAACTGCTTGGCGCTGTGCCGTTCAGCCCGGTCAGCGGCCCACGGCTGCTGAC                                                                                                                                                                                                                                            >  2:505364/1‑168                                                                                          GTTGCCCGCGTACCGCAAGTGGCACTCGTTTGGCGAGTATGTGTTCGATCATGGTTGGGCCGATGCTTGTGAGCGGGCCGGTATCGCCTACTACCCAAAACTGCTTGGCGCTGTGCCGTTCAGCCCGGTCAGCGGCCCACGGCTGCTGACCGGGCTGAACG                                                                                                                                                                                                                                 <  1:1043512/161‑1                                                                                             GCCCGCGTACCGCAAGTGGCACTCGTTTGGCGAGTATGTGTTCGCTCATGGTTGGGCCGATGCTTGTGAGCGGGCCGGTATCGCCTACTACCCACAACTGCTTGGCGCTGTGCCGTTCAGCCCGGTCAGCGGCCCACGGCTG                                                                                                                                                                                                                                                 >  2:81242/1‑142                                                                                                                                              GGTTGGGCCGATGCTTGTGAGCGGGCCGGTAGCGCCTACTACCCACAACTGCCTGGCGCTGTGCCGTTCAGCCCGGTCAGCGGCCCACGGCTGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGC                                                                                                                                                                                         <  2:583225/149‑1                                                                                                                                                            TTGTGAGCGGGCCGGTATCGCCTACTACCCAAAACTGCTTGGCGCTGTGCCGTTCAGCCCGGTCAGCGGCCCACGGCTGCTGA                                                                                                                                                                                                                                             >  2:245522/1‑83                                                                                                                                                                                           AAACTGCTTGGCGCTGTGCCGTTCAGCCCGGTCAGCGGCCCACGGCTGCTGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGG                                                                                                                                                                                                           <  1:29246/86‑1                                                                                                                                                                                                                                            TGACCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCGGCCCAACCATGATCGAACACATACTCGCCAAACGAGTGCCACTTGCGGTACGCGGGCAACAGCGCCCGTACCTGTCCGTCACGCTCCAGCACCAGGTGCTCGGCGGCCCAGCCCGTGTTGCGCGCCACGCTGCCGCTGTCCTCCATT                      <  2:1067454/218‑1                                                                                                                                                                                                                                               CCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCGGCCCAACCATGATCGAACACATACTCGCCAAACGAGTGCCACTTGCGGTACGCGGGCAACAGCGCCCGTACCTGTCCGTCACGCTCCAGCACCAGGTGCTCGGCGGCCCAGCCCGTGTTGCGCGCCACGCTGCCGCTGTCCTCCATTGCACTGAGAAAAGCATGGCG  <  1:896641/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCAATGGAGGACAGCGGCAGCGTGGCGCGCAACACGGGCTGGGCCGCCGAGCACCTGGTGCTGGAGCGTGACGGACAGGTACGGGCGCTGTTGCCCGCGTACCGCAAGTGGCACTCGTTTGGCGAGTATGTGTTCGATCATGGTTGGGCCGATGCTTGTGAGCGGGCCGGTATCGCCTACTACCCAAAACTGCTTGGCGCTGTGCCGTTCAGCCCGGTCAGCGGCCCACGGCTGCTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5160865‑5160627 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgacCGGGCTGAACGGCACAGCGCCAAGCAGTTTTGGGTAGTAGGCGATACCGGCCCGCTCACAAGCATCGGCCCAACCATGATCGAACACATACTCGCCAAACGAGTGCCACTTGCGGTACGCGGGCAACAGCGCCCGTACCTGTCCGTCACGCTCCAGCACCAGGTGCTCGGCGGCCCAGCCCGTGTTGCGCGCCACGCTGCCGCTGTCCTCCATTGCACTGAGAAAAGCATGGCG  >  AE015451/5160650‑5160883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.