New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5188554 =	57 (0.990)	3 (0.050)	3/324	NT	5.6%	coding (343/882 nt)	PP_4568	putative metabolite efflux pump
	?	AE015451	5188590 =	47 (0.860)					coding (307/882 nt)	PP_4568	putative metabolite efflux pump

TCGGCGCTGGCCCTGGCTGGCCTGTTGCTGATCGGCCCGTTGCTAGGGCTGCGCTGGCCGCGTACTCGCGGGAGCATTCTGCGCGCCCTGGGTACCGGTTGTGTGCTGCTCGGTGCCTATCAGATCTTCTATCTGTTGGCGCTTGATACCCATGTCACCCCCGGCGTCATGGCCACGGTGATGGGGGTACAACCGATCCTCACCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5188761‑5188554 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaccgtggCCATGACGCCGGGGGTGACATGGGTATCAAGCGCCAACAGATAGAAGATCTGATAGGCACCGAGCAGCACACAACCGGTACCCAGGGCGCGCAGAATGCTCCCGCGAGTACGCGGCCAGCGCAGCCCTAGCAACGGGCCGATCAGCAACAGGCCAGCCAGGGCCAGCGCCGAGCGCAACAGCAGAAAGGCGAACGGGCTGGCATGCGCCAGGCCGAGCTTGGAGACGATCGCC  >  AE015451/5188590‑5188822                                                                                                                                                                                                                                                                                                                                                                                                                                                           cCGGCGCTGGCCCTGGCTGGCCTGTTGCTGATCGGCCCGTTGCTAGGGCTGCGCTGGCCGCGTACTCGCGGGAGCATTCTGCGCGCCCTGGGTACCGGTTGTGTGCTGCTCGGTGCCTATCAGATCTTCTATCTGTTGGCGCTTGATACCCATGTCACCCCCGGCGTCATGGCCACGGTGATGGGGGTACAACCGATCCTCAC                                                                                                                                                                                                                                                <  1:190596/202‑1                         TTGCTGATCGGCCCGTTGCTAGGGCTGCGCTGGCCGCGGACTCGCGGGAGCATTCTGCGCGCCCTGGGTACCGGTTGTGTGCTGCTCGGTGCCTATCAGATCTTCTATCTGTTGGCGCTTGATACCCATGTCACCCCCGGCGTCATGGCCACGGTGATGGGGGTACAACCGATCCTCACCGTGGCCATG                                                                                                                                                                                                                                      <  2:268976/189‑1                              GATCGGCCCGTTGCTAGGGCTGCGCTGGCCGCGTACTCGCGGGAGCATTCTGCGCGCCCTGGGTACCGGTTGTGTGCTGCTCGGTGCCTATCAGATCTTCTATCTGTTGGCGCTTGATACCCATGTCACCCCCGGCGTCATGGCCACGGTGATGGGGGTACAACCGATCCTCACC                                                                                                                                                                                                                                               <  2:984440/175‑1                                                                                    CGCCCTGGGTACCGGTTGTGTGCTGCTCGGTGCCTATCAGATCTTCTATCTGTTGGCGCTTGATACCCATGTCACCCCCGGCGTCATGGCCACGGTGATGGGGGTACAACCGATCCTCACCGTG                                                                                                                                                                                                                                            <  1:650718/124‑1                                                                                    CGCCCTGGGTACCGGTTGTGTGCTGCTCGGTGCCTATCAGATCTTCTATCTGTTGGCGCTTGATACCCATGTCACCCCCGGCGTCATGGCCACGGTGATGGGGGTACAACCGATCCTCACCGTG                                                                                                                                                                                                                                            >  2:650715/1‑124                                                                                               CCGGTTGTGTGCTGCTCGGTGCCTATCAGATCTTCTATCTGTTGGCGCTTGATACCCATGTCACCCCCGGCGTCATGGCCACGGTGATGGGGGTACAACCGATCCTCACCGTGGCCATGACGCCGGGGGTGACATGGGTATCAAGC                                                                                                                                                                                                           <  1:1001648/146‑1                                                                                                                                                  ATACCCATGTCACCCCCGGCGTCATGGCCACGGTGATGGGGGTACAACCGATCCTCACCGTGGCCATGACGCCGGG                                                                                                                                                                                                                              <  2:58265/76‑1                                                                                                                                                                 gCGGCGTCGTGGCGACGGTGATGGGGGTACAACCGATCCTCACCGTGGCCATGAGGCCGGGGGTGACATGGGTATCAAGCGCCA                                                                                                                                                                                                       <  2:18948/83‑1                                                                                                                                                                                                          ACCGTGGCCATGACGCCGGGGGTGACATGGGTATCAAGCGCCAACAGATAGAAGATCTGATAGGCACCGAGCAGCACACAACCGGTACCCAGGGCGCGCAGAATGCTCCCGCGAGTACGCGGCCAGCGCAGCCCTAGCAACGGGCCGATCAGCAACAGGCCAGCCAGGGCCAGCGCCGAGCGCAACAGCA                                                    >  2:869535/1‑190                                                                                                                                                                                                          ACCGTGGCCATGACGCCGGGGGTGACATGGGTATCAAGCGCCAACAGATAGAAGATCTGATAGGCACCGAGCAGCACACAACCGGTACCCAGGGCGCGCAGAATGCTCCCGCGAGTACGCGGCCAGCGCAGCCCTAGCAACGGGCCGATCAGCAACAGGCCAGCCAGGGCCAGCGCCGAGCGCAACA                                                       >  2:519880/1‑187                                                                                                                                                                                                          ACCGTGGCCATGACGCCGGGGGTGACATGGGTATCAAGCGCCAACAGATAGAAGATCTGATAGGCACCGAGCAGCACACAACCGGTACCCAGGGCGCGCAGAATGCTCCCGCGAGTACGCGGCCAGCGCAGCCCTAGCAACGGGCCGATCAGCAACAGGCCAGCCAGGGCCAGCGCCGAG                                                              >  1:973848/1‑180                                                                                                                                                                                                          ACCGTGGCCATGACGCCGGGGGTGACATGGGTATCAAGCGCCAACAGATAGAAGATCTGATAGGCACCGAGCAGCACACAACCGGTACCCAGGGCGCGCAGAATGCTCCCGCGAGTACGCGGCCAGCGCAGCCCTAGCAACGGGCCGATCAGCAACAGGCCAGCCAGGGCCAGCGCCGAG                                                              <  2:973845/180‑1                                                                                                                                                                                                          ACCGTGGCCATGACGCCGGGGGTGACATGGGTATCAAGCGCCAACAGATAGAAGATCTGATAGGCACCGAGCAGCACACAACCGGTACCCAGGGCGCGCAGAATGCTCCCGCGAGTACGCGGCCAGCGCAGCCCTAGCAACGGGCCGATCAGCAACAGGCCAGCCAGGGCCAGCGCCGA                                                               >  1:816831/1‑179                                                                                                                                                                                                          ACCGTGGCCATGACGCCGGGGGTGACATGGGTATCAAGCGCCAACAGATAGAAGATCTGATAGGCACCGAGCAGCACACAACCGGTACCCAGGGCGCGCAGAATGCTCCCGCGAGTACGCGGCCAGCGCAGCCCTAGCAACGGGCCGATCAGCAACAGGCCAGCCAGGGCCAGCGCC                                                                 >  2:786223/1‑177                                                                                                                                                                                                          ACCGTGGCCATGACGCCGGGGGTGACATGGGTATCAAGCGCCAACAGATAGAAGATCTGATAGGCACCGAGCAGCACACA                                                                                                                                                                  >  1:809879/1‑80                                                                                                                                                                                                          ACCGTGGCCATGACGCCGGGGGTGACATGGGTATCAAGCGCCAACAGATAGAAGATCTGATAGGCACCGAGCAGCACACA                                                                                                                                                                  <  2:809876/80‑1                                                                                                                                                                                                           CCGTGGCCATGACGCCGGGGGTGACATGGGTATCAAGCGCCAACAGATAGAAGATCTGATAGGCACCGAGCAGCACACAACCGGTACCCAGGGCGCGCAGAATGCTCCCGCGAGTACGCGGCCAGCGCAGCCCTAGCAACGGGCCGATCAGCAACAGGCCAGCCAGGGCCAGCGCCGAGCGCAACAGCAGAAAGGCGAACGGGCTGGCATGCGCCAG                        <  2:791196/217‑1                                                                                                                                                                                                              TGGCCATGACGCCGGGGGTGACATGGGTATCAAGCGCCAACAGATAGAAGATCTGATAGGCACCGAGCAGCACACAACCGGTACCCAGGGCGCGCAGAATGCTCCCGCGAGTACGCGGCCAGCGCAGCCCTAGCAACGGGCCGATCAGCAACAGGCCAGCCAGGGCCAGCGCCGAGCGCAACAGCAGAAAGGCGAACGGGCTGGCATGCGCCAGGCCGAGCTTGGAGACGATCGCC  <  1:974185/236‑1                                                                                                                                                                                                                GCCATGACGCCGGGGGTGACATGGGTATCAAGCGCCAACAGATAGAAGATCTGATAGGCACCGAGCAGCACACAACCGGTACCCAGGGCGCGCAGAATGCTCCCGCGAGTACGCGGCCAGCGCAGCCCTAGCAACGGGCCGATCAGCAACAGGCCAGCCAGGGCCAGCGCCG                                                                >  1:159612/1‑172                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCGGCGCTGGCCCTGGCTGGCCTGTTGCTGATCGGCCCGTTGCTAGGGCTGCGCTGGCCGCGTACTCGCGGGAGCATTCTGCGCGCCCTGGGTACCGGTTGTGTGCTGCTCGGTGCCTATCAGATCTTCTATCTGTTGGCGCTTGATACCCATGTCACCCCCGGCGTCATGGCCACGGTGATGGGGGTACAACCGATCCTCACCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5188761‑5188554 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaccgtggCCATGACGCCGGGGGTGACATGGGTATCAAGCGCCAACAGATAGAAGATCTGATAGGCACCGAGCAGCACACAACCGGTACCCAGGGCGCGCAGAATGCTCCCGCGAGTACGCGGCCAGCGCAGCCCTAGCAACGGGCCGATCAGCAACAGGCCAGCCAGGGCCAGCGCCGAGCGCAACAGCAGAAAGGCGAACGGGCTGGCATGCGCCAGGCCGAGCTTGGAGACGATCGCC  >  AE015451/5188590‑5188822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.