New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5297727	48 (0.830)	3 (0.060)	3/322	NT	5.4%	coding (199/567 nt)	PP_4671	conserved exported protein of unknown function
	?	AE015451	= 5297808	59 (1.090)					coding (118/567 nt)	PP_4671	conserved exported protein of unknown function

GCTGCCGACCGTGCATGGGTCATCCGCCTCGCTGATGCTCAGCACCGGGTGGCCGCCAATACGCTGGAACAGCCGATCGCGCTGGCCCTGGTCAAGCTTGCCAATGTAGAGGGCATCGCAGGCCTGGGCGACCTGGGTGTCTTCTGCCAGCAGGCGCCGCACCTGCAGCGGCCGGCCGGACTCCTGGACATGGCCCTTGATGAGATCGTCGGCGTACTCGGTCGGGCCGACCAGGCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5297488‑5297727 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggcacagCAGCGCGCCAAGGCAGTCACCCAGGTAGTACTGGGTATTTTCAGTTACGCCCGCTGGCCCGTCGAACCTTCTCCTTTACGCCTGTGCCTGGTCGGCCCGACCGAGTACGCCGACGATCTCATCAAGGGCCATGTCCAGGAGTCCGGCCGGCCGCTGCAGGTGCGGCGCCTGCTGGCAGAAGACACCCAGGTCGCCCAGGCCTGC  <  AE015451/5297808‑5297605                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCTGCCGACCGTGCATGGGTCATCCGCCTCGCTGATGCTCAGCACCGGGTGGCCGCCAATACGCTGGAACAGCCGATCGCGCTGGCCCTGGTCAAGCTTGCCAATGTAGAGGGCATCGCAGGCCTGGGCGACCTGGGTGTCTTCTGCCAGCAGGCGCCGCACCTGCAGCGGCCGGCCGGACTCCTGGACATGGCCCTTGATGAGATCGTCGGCGTACTCGGTCGGGCCGACCAGG                                                                                                                                                                                                                   <  1:867813/235‑1                       TCCGCCTCGCTGATGCTCAGCACCGGGTGGCCGCCAATACGCTGGAACAGCCGATCGCGCTGGCCCTGGTCAAGCTTGCCAATGTAGAGGGCATCGCAGGCCTGGGCGACCTGGGTGTCTTCTGCCAGCAGGCGCCGCACCTGCAGCGGCCGGCCGGACTCCTGGACATGGCCCTTGATGAGATCGTCGGCGTACTCGGTCGGGCCGAC                                                                                                                                                                                                                       >  1:423810/1‑209                                                        CCAATACGCTGGAACAGCCGATCGCGCTGGCCCTGGTCAAGCTTGCCAATGTAGAGGGCATCGCAGGCCTGGGCGACCTGGGTGTCTTCTGCCAGCAGGCGCCGCACCTGCAGCGGCCGGCCGGACTCCTGGACATGGCCCTTGATGAGATCGTCGGCGTACTCGGGCGGGCCGCCCAGG                                                                                                                                                                                                                   >  1:132501/1‑180                                                                                                                                   ACCTGGGTGTCTTCTGCCAGCAGGCGCCGCACCTGCAGCGGCCGGCCGGACTCCTGGACATGGCCCTTGATGAGATCGTCGGCGTACTCGGTCGGGCCGACCAG                                                                                                                                                                                                                    <  2:296612/104‑1                                                                                                                                                                                                   CCTTGATGAGATCGTCGGCGTACTCGGGCGGGCCGACCAGGCACAGCAGCGCGCCAAGGCAGTCACCCAGGTAGTACTGGGTATTTTCAGTTACGCCCGCTGGCCCGTCGAACCTCCTCCTTTACGCCCGTGCCTGGTCGGCCCGACCGAGga                                                                                                   >  1:782204/1‑151                                                                                                                                                                                                     TTGATGAGATCGTCGGCGTACTCGGTCGGGCCGACCAGGCACAGCAGCGCGCCAAGGCAGTCACCCGGGTA                                                                                                                                                                                   >  2:171467/1‑71                                                                                                                                                                                                                     CGTACTCGGTCGGGCCGACCAGGCACAGCAGCGCGCCAAGGCAGTCACCCAGGTAGTACTGGGTATTTTCAGTTACGCCCGCTGGCCCGTCGAACCTTCTCCTTTACGCCTGTGCCTGGTCGGCCCGACCGAGTACGCCGACGATCTCATCAAGGGCCATGTCCAGGAGTCCGGCCGGCCGC                                                    >  1:137014/1‑182                                                                                                                                                                                                                                           GCACAGCAGCGCGCCAAGGCAGTCACCCAGGTAGTACTGGGTATTTTCAGTTACGCCCGCTGGCCCGTCGAACCTTCTCCTTTACGCCTGTGCCTGGTCGGCCCGACCGAGTACGCCGACGATCTCATCAAGGGCCATGTCCAGGAGTCCGGCCGGCCGCTGCAGGTGCGGCGCCTGCTGGCAGAAGACACCCAGGTCGCCCAGGCCT    <  1:430966/208‑1                                                                                                                                                                                                                                           GCACAGCAGCGCGCCAAGGCAGTCACCCAGGTAGTACTGGGTATTTTCAGTTACGCCCGCTGGCCCGTCGAACCTTCTCCTTTACGCCTGTGCCTGGTCGGCCCGACCGAGTACGCCGACGATCTCATCAAGGGCCATGTCCAGGAGTCCGGCCGGCCGCTGCAGGTGCGGCGCCTGCTGGCAGAAGACACCCAGGTCGCCCAGGCCT    >  2:430963/1‑208                                                                                                                                                                                                                                               AGCAGCGCGCCAAGGCAGTCACCCAGGTAGTACTGGGTATTTTCAGTTACGCCCGCTGGCCCGTCGAACCTTCTCCTTTACGCCTGTGCCTGGTCGGCCCGACCGAGTACGCCGACGATCTCATCAAGGGCCATGTCCAGGAGTCCGGCCGGCCGCTGCAGGTGCGGCGCCTGCTGGCAGAAGACACCCAGGTCGCCCAGGCCTGC  <  2:455109/206‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCTGCCGACCGTGCATGGGTCATCCGCCTCGCTGATGCTCAGCACCGGGTGGCCGCCAATACGCTGGAACAGCCGATCGCGCTGGCCCTGGTCAAGCTTGCCAATGTAGAGGGCATCGCAGGCCTGGGCGACCTGGGTGTCTTCTGCCAGCAGGCGCCGCACCTGCAGCGGCCGGCCGGACTCCTGGACATGGCCCTTGATGAGATCGTCGGCGTACTCGGTCGGGCCGACCAGGCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5297488‑5297727 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggcacagCAGCGCGCCAAGGCAGTCACCCAGGTAGTACTGGGTATTTTCAGTTACGCCCGCTGGCCCGTCGAACCTTCTCCTTTACGCCTGTGCCTGGTCGGCCCGACCGAGTACGCCGACGATCTCATCAAGGGCCATGTCCAGGAGTCCGGCCGGCCGCTGCAGGTGCGGCGCCTGCTGGCAGAAGACACCCAGGTCGCCCAGGCCTGC  <  AE015451/5297808‑5297605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.