New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5325153	62 (1.080)	3 (0.060)	3/314	NT	5.0%	coding (66/279 nt)	PP_4685	conserved protein of unknown function
	?	AE015451	= 5325139	57 (1.080)					coding (52/279 nt)	PP_4685	conserved protein of unknown function

TGGCCTGTAAGTTCGTCACCTTCCTGTGCCTGCCCGCCAATGGGCAGGCACAGGCCGCTCACCCTCCGATGGCAAAAAGCCGCATATTTCCCAACGCCCGCTACACTCCTCTCAGACCTGCTCGCGATTTATCCCCCCATTCCCGTTCAGCCATCGCAAGGAGGCTCGATGAACGATGAATTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5324920‑5325153 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgcatgcagccACTGCGCAGACGTCTTGCCAAGGTTCTTCAGATGCTGCAATTCATCGTTCATCGAGCCTCCTTGCGATGGCTGAACGGGAATGGGGGGATAAATCGCGAGCAGGTCTGAGAGGAGTGTAGCGGGCGTTGGGAAATATGCGGCTTTTTGCCATCGGAGGGTGAGCGGCCTGTGCCTGCCCATTGGCGGGCAGGCACAGGAAGGTGACGAACTTACAGGCCAGGCAAC  <  AE015451/5325139‑5324914                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGGCCTGTAAGTTCGTCACCTTCCTGTGCCTGCCCGCCAATGGGCAGGCACAGGCCGCTCACCCTCCGATGGCAAAAAGCCGCATATTTCCCAACGCCCGCTACACTCCTCTCAGACCTGCTCGCGATTTATCCCCCCATTCCCGTTCAGCCATCGCAAGGAGGCTCGATGAACGATGAATTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATG                                                                                                                                                                                                                                         >  2:405390/1‑229                                   CGCCAATGGGCAGGCACAGGCCGCTCACCCTCCGATGGCAAAAAGCCGCATATTTCCCAACGCCCGCTACACTCCTCTCAGACCTGCTCGCGATTTATCCCCCCATTCCCGTTCAGCCATCGCAAGGAGGCTCGATGAACGATGAATTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCA                                                                                                                                                                                                                                       >  2:679243/1‑197                                            GCAGGCACAGGCCGCTCACCCTCCGATGGCAAAAAGCCGCATATTTCCCAACGCCCGCTACACTCCTCTCAGACCTGCTCGCGATTTATCCCCCCATTCCCGTTCAGCCATCGCAAGGAGGCTCGATGAACGATGAATTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCA                                                                                                                                                                                                                                       <  1:537373/188‑1                                                                                                    cctgCACTCCTCTCAGACCTGCTCGCGATTTATCCCCCCATTCCCGTTCAGCCATCGCAAGGAGGCTCGATGAACGATGAATTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCCACTGCGCAGACGTCTTGCCAAGGTTCTTCAGATGCTGCAATTCATCGTTCATCGA                                                                                                                                                                             <  2:647016/186‑1                                                                                                                                                     AGCCATCGCAAGGAGGCTCGATGAACGATGAATTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCCACTGCGCAGACGTCTTGCCAAGGTTCTTCAGATGCGGCAATTCATCGTTCATCGAGCCTCCTTGCGATGGCTGAACGGGAATGGGGGGGTAAATCGCGAGCAGGTCTGAGAGGAGTGTAGCGGGCGTTGGGg                                                                                                >  1:249524/1‑217                                                                                                                                                                                              CTGAAGAACCTTGGCAAGACGTCTGCGCAGGGGCTGCATGCAGCCACTGCGCAGACGTCTTGCCAGGGTTCTTCAGATGCTGCAATTCATCGTTCATCGAGCCTCCTTGCGATGGCTGAACGGGAAGGGGGGGAT                                                                                                                                          >  2:516851/1‑135                                                                                                                                                                                                                        GCAGTGGCTGCATGCAGCCACTGCGCAGACGTCTTGCCAAGGTTCTTCAGATGCTGCAATTCATCGTTCATC                                                                                                                                                                               <  1:1000506/72‑1                                                                                                                                                                                                                                TGCATGCAGCCACTGCGCAGACGTCTTGCCAAGGTTCTTCAGATGCTGCAATTCATCGTTCATCGAGCCTCCTTGCGATGGCTGAACGGGAATGGGGGGATAAATCGCGAGCAGGTCTGAGAGGAGTGTAGCGGGCGTTGGGAAATATGCGGCTTTTTGCCATCGGAGGGTGAGCGGCCTGT                                                         >  1:291173/1‑182                                                                                                                                                                                                                                  CATGCAGCCACTGCGCAGACGTCTTGCCAAGGTTCTTCAGATGCTGCAATTCATCGTTCATCGAGCCTCCTTGCGATGGCTGAACGGGAATGGGGGGATAAATCGCGAGCAGGTCTGAGAGGAGTGTAGCGGGCGTTGGGAAATATGCGGCTTTTTGCCATCGGAGGGTGAGCGGCCTGTGCCTGCCCATTGGCGGGCAGGCACAGGAAGGTGACGAACTTACAGGCCAGGCAAC  >  1:788269/1‑235                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGGCCTGTAAGTTCGTCACCTTCCTGTGCCTGCCCGCCAATGGGCAGGCACAGGCCGCTCACCCTCCGATGGCAAAAAGCCGCATATTTCCCAACGCCCGCTACACTCCTCTCAGACCTGCTCGCGATTTATCCCCCCATTCCCGTTCAGCCATCGCAAGGAGGCTCGATGAACGATGAATTGCAGCATCTGAAGAACCTTGGCAAGACGTCTGCGCAGTGGCTGCATGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5324920‑5325153 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgcatgcagccACTGCGCAGACGTCTTGCCAAGGTTCTTCAGATGCTGCAATTCATCGTTCATCGAGCCTCCTTGCGATGGCTGAACGGGAATGGGGGGATAAATCGCGAGCAGGTCTGAGAGGAGTGTAGCGGGCGTTGGGAAATATGCGGCTTTTTGCCATCGGAGGGTGAGCGGCCTGTGCCTGCCCATTGGCGGGCAGGCACAGGAAGGTGACGAACTTACAGGCCAGGCAAC  <  AE015451/5325139‑5324914

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.