New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5452441 =	57 (0.990)	3 (0.050)	3/330	NT	5.2%	coding (972/1518 nt)	lnt	Apolipoprotein N‑acyltransferase
	?	AE015451	5452490 =	55 (0.990)					coding (1021/1518 nt)	lnt	Apolipoprotein N‑acyltransferase

TGATGGTCAGCAGCAGGTCGCTACGCGCAGCCAGGCCGGCGGCGAACTCGGGGTAGACCACCTCGTAGCAGATGTAAGGGGCAATCTGGTAGCCCTTGGCCTGCAGCAGCGGCTGGTCTTCCGGACCGCGGGCGAAGTCGGACATGGGCAGGTTGAAGAACTCGATGGCCCCACGCAGCACGTCTTGCAGCGGCACATACTCGCCAAATGGCACCAGCTTCTGCTTGAGGTAGGTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5452679‑5452441 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccgCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGCCCCTTACATCTGCTACGAGGTGGTCTACCCCGAGTTCGCCGCCGGCCTGGCTGCGCGTAGCGACCTGCTGCTGACCATCAGCAACGACACCTGGTTCGGCAAATCGATCGGCCCCTTGC  >  AE015451/5452490‑5452718                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGATGGTCAGCAGCAGGTCGCTACGCGCAGCCAGGCCGGCGGCGAACTCGGGGTAGACCACCTCGTAGCAGATGTAAGGGGCAATCTGGTAGCCCTTGGCCTGCAGCAGCGGCTGGTCTTCCGGACCGCGGGCGAAGTCGGACATGGGCAGGTTGAAGAACTCGATGGCCCCACGCAGCACGTCTTGCAGCGGCACATACTCGCCAAATGGCACCAGCTTCTGCTTGAGGTAGGTG                                                                                                                                                                                                                                          <  1:338950/236‑1                                                                                                                                                                               agagacaGTCTTGCAGCGGCACATACTCGCCAAATGGCACCAGCTTCTGCTTGAGGTAGGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGCCCCTTACATCTGCTACGAGGTGGTCTACCCCGAGTTCGCCGCCGGCCTGGCTGCGCGTAGC                                                            <  1:1072436/229‑1                                                                                                                                                                                                     ATACTCGCCAAATGGCACCAGCTTCTGCTTGAGGTAGGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCG                                                                                                                                                      >  2:1072433/1‑124                                                                                                                                                                                                          CGCCAAATGGCACCAGCTTCTGCTTGAGGTAGGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGCCCCTTACATCTGCTACGAGGTGGTCTACCCCGAGTTCGCCGCCGGCCTGGCTGCGCGTAGCGACCTGCTGCTGACCATCAGCAACGA                                  >  1:1003139/1‑235                                                                                                                                                                                                                                          GTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGCCCCTTACATCTGCTACGAGGTGGTCTACCCCGAGTTCGCCGCCGGCCTGGCTGCGCGTAGCGACCTGCTGCTGACCATCAGCAACGACACCTGGTTCGGCAAATCGATCGGCCCCTTGC  >  1:364368/1‑235                                                                                                                                                                                                                                          GTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGCCCCTTACATCTGCTACGAGGTGGTCTACCCCGAGTTCGCCGCCGGCCTGGCTGCGCGTAGCGACCTGCTGCTGACCATCAGCAACGACACCTGGTTCGGC                     >  2:1034768/1‑216                                                                                                                                                                                                                                          GTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACC                                                                                                                                >  1:980541/1‑109                                                                                                                                                                                                                                          GTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACC                                                                                                                                <  2:980538/109‑1                                                                                                                                                                                                                                             CCGCTGCAAGACGTGCTGCGCGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGCCCCTTACATCTGCTACGAGGTGGTCTACCCCGAGTTCGCCGCCGGCCTGGCTGCGCGTAGCGACCTGCTGCTGACCATCAGCAACGACACCTGGTTCGGCAAATC                <  1:729357/218‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGATGGTCAGCAGCAGGTCGCTACGCGCAGCCAGGCCGGCGGCGAACTCGGGGTAGACCACCTCGTAGCAGATGTAAGGGGCAATCTGGTAGCCCTTGGCCTGCAGCAGCGGCTGGTCTTCCGGACCGCGGGCGAAGTCGGACATGGGCAGGTTGAAGAACTCGATGGCCCCACGCAGCACGTCTTGCAGCGGCACATACTCGCCAAATGGCACCAGCTTCTGCTTGAGGTAGGTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5452679‑5452441 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccgCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGCCCCTTACATCTGCTACGAGGTGGTCTACCCCGAGTTCGCCGCCGGCCTGGCTGCGCGTAGCGACCTGCTGCTGACCATCAGCAACGACACCTGGTTCGGCAAATCGATCGGCCCCTTGC  >  AE015451/5452490‑5452718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.