New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 5509910 | 46 (0.800) | 5 (0.100) | 5/302 | NT | 10.8% | coding (109/1488 nt) | urtB | putative Urea ABC transporter |
? | AE015451 | = 5509890 | 42 (0.830) | coding (89/1488 nt) | urtB | putative Urea ABC transporter |
GCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5509719‑5509910 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagcaggccggcctgctcgGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGGAGTCTGAGCATGCGGGCAATCCTGGAAATCGGTGTTGGATTCTTCGCGGGTGAGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCC < AE015451/5509890‑5509712 GCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCCAGCCCGCCGAGCAGcc > 2:697578/1‑179 GCACCGTCTCTGTGTAGGAGCGGGCCCCCCCGCGAAGAATCCAACCCCGATTTCCAGGATTGCCCGCATGCTCAGACCCCTGCTCACCCTCCTGCTGCTAACCCCCCTGGCAACCCCCGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCG < 2:173179/167‑1 ACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCCGGC > 2:430633/1‑163 gtTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCT > 1:1008853/3‑151 gtTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCT < 2:1008850/149‑1 CGCATGCTCAGACCCCTGCTCCCCCTCCTGCTGCTAATCCCCCTGGCACCCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGC < 1:215803/97‑1 CACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCCCCAAGCCCGCCGAGCAGGCCCGCCTGCTCGc > 2:234829/1‑92 CTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGGAGTCTGAGCATGCGGGCA > 2:1060756/1‑178 ATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGGAGTCTGAGCATGCGGGCAATCC > 1:1049537/1‑176 GAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGGAGTCTGAGCATGCGGGCAATCCTGGAAATCGGTGTTGGATTCTTCGCGGGTGAGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAA > 2:953295/1‑212 TCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGG < 1:880960/114‑1 CCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGGAGTCTGAGCATGCGGGCAATCCTGGAAATCGGTGTTGGATTCTTCGCGGGTGA < 1:1060759/164‑1 GAGCAGGCCGGCCTGCTCGGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGGAGTCTGAGCATGCGGGCAATCCTGGAAATCGGTGTTGGATTCTTCGCGGGTGAGC < 2:319600/152‑1 AGCAGGCCGGCCTGCTCGGCGGGCTGGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGGAGTCTGAGCATGCGGGCAATCCTGGAAATCGGTGTTGGATTCTTCGCGGGTGAGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCT < 1:63661/188‑1 gAGGCCGGCCTGCTCGGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGGGGTCTGAGCATGCGGGCAATCCTGGAAATCGGTGTTGGATTCTTCGCGGGTGAGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCC < 2:819061/194‑1 CAGGCCGGCCTGCTCGGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGT > 1:272242/1‑87 GCCTGCTCGGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGG < 1:467297/75‑1 GGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGAT < 2:1036736/57‑1 GCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5509719‑5509910 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagcaggccggcctgctcgGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGGAGTCTGAGCATGCGGGCAATCCTGGAAATCGGTGTTGGATTCTTCGCGGGTGAGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCC < AE015451/5509890‑5509712 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |