New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5559582	63 (1.090)	5 (0.100)	5/302	NT	8.4%	coding (915/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit
	?	AE015451	= 5559562	54 (1.060)					coding (935/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit

GCCCGTCTTGCTGAATCAATTGCCGATCACAATCCGCCTCGAGAGCAGCACTCAACGGCTGGCCAGGCAGAGCCTGAACCACACGCTGGCCCTCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5559338‑5559582 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgggcgcgcccggccaCTGGTTTCTCCACGGATTTGAAGACCCTGGTCACACTGGGGCGAGCGGAGGTCGTATTGCCAACTGGCGGCATCTGGATGCCGGACAGTGGCGATGCGGCCCTCTGGCAGCAAGTCTGCCAGTTGCGCAACGAGGGCCAGCGTGTGGTTCAGGCTCTGCCTGGCCAGCCGTTGAGTGCTGCTCTCGAGGCGGATTGTGATCGGCAATTGATTCAGCAAGACGGGCGCTGGCAGG  <  AE015451/5559562‑5559329                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCCCGTCTTGCTGAATCAATTGCCGATCACAATCCGCCTCGAGAGCAGCACTCAACGGCTGGCCAGGCAGAGCCTGAACCACACGCTGGCCCTCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCG                                                                                                                                                                                                                                                      <  1:734098/235‑1                                 TCCGCCTCGAGAGCAGCACTCAACGGCTGGCCAGGCAGAGCCTGAACCACACGCTGGCCCTCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCcaa                                                                                                                                                                                                                                          >  1:152193/1‑212                                                                                                               ACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCACTGGTTTCTCCACGGATTTGAAGACCCTGGTCACACTG                                                                                                                                                                                                      <  2:921321/173‑1                                                                                                                                       CCACTGGCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGGGACCAGGGTCGTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCACTGGTTTCTCCACGGATTTGAAGACCCTGGTC                                                                                                                                                                                                            <  2:15458/143‑1                                                                                                                                           TGTCCGGCAGCCAGATGCCGCCAGGTGGCAATACGGCCTCCGCTCGCCCCAGCGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCACTGGTTTCTCCACGGATTTGAAGACCC                                                                                                                                                                                                                 <  2:20670/134‑1                                                                                                                                                                                                           CTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCACTGGTTTCTCCACGGATTTGAAGACCCTGGTCACACTGGGGCGAGCGGAGGTCGTATTGCCAACTGGCGGCATCTGGATGCCGGACAGTGGCGATGCGGCCCTCTGGCAGCAAGTCTGCCAGTTGCGCAACGAGGGCCAGCGTGTGGTTCAGGCTCT                                                                               >  2:895278/1‑200                                                                                                                                                                                                                         AGAAACCAGTGGCCGGGCGCGCCCGGCCACTGGTTTCTCCACGGATTTGAAGACCCTGGTCACACTGGGGCGAGCGGAGGTCGTATTGCCAACTGGCGGCATCTGGATGCCGGACAGTGGCGATGCGGCCCTCTGGCAGCAAGTCTGCCAGTTGCGCAACGAGGGCCAGCGTGTGGTTCAGGCTCTGCCTGGCCAGCCGTTGAGTGCTGCTCTCGAGGCGGATTGTGGTCGGCAA                              >  1:187629/1‑235                                                                                                                                                                                                                                  TGGCCGGGCGCGCCCGGCCACTGGTTTCTCCACGGATTTGAAGACCCTGGTCACACTGGGGCGAGCGGAGGTCGTATTGCCAACTGGCGGCATCTGGATGCCGGACAGTGGCGATGCGGCCCTCTGGCAGCAAGTCTGCCAGTTGCGCAACGAGGGCCAG                                                                                                <  2:530523/160‑1                                                                                                                                                                                                                                            CGCCCGGCCACTGGTTTCTCCACGGATTTGAAGACCCTGGTCACACTGGGGCGAGCGGAGGTCGTATTGCCAACTGGCGGCATCTGGATGCCGGACAGTGGCGATGCGGCCCTCTGGCAGCAAGTCTGCCAGTTGCGCAACGAGGGCCAGCGTGTGGTTCAGGCTCTGCCTGGC                                                                        <  2:446282/174‑1                                                                                                                                                                                                                                                CGGCCACTGGTTTCGCCACGGATTGGAAGACCCTGGTCACACTGGGGCGAGCGGAGGTCGTATTGCCAACTGGCGGCATCTGGATGCCGGACAGTGGCGATGCGGCCCTCTGGCAGCAAGTCTGCCAGTTGCGCAACGAGGGCCAGCG                                                                                              <  2:681694/148‑1                                                                                                                                                                                                                                                  GCCACTGGTTTCTCCACGGATTTGAAGACCCTGGTCACACTGGGGCGAGCGGAGGTCGTATTGCCAACTGGCGGCATCTGGATGCCGGACAGTGGCGATGCGGCCCTCTGGCAGCAAGTCTGCCAGTTGCGCAACGAGGGCCAGCGTGTGGTTCAGGCTCTGCCTGGC                                                                        <  1:511201/168‑1                                                                                                                                                                                                                                                    CACTGGTTTCTCCACGGATTTGAAGACCCTGGTCACACTGGGGCGAGCGGAGGTCGTATTGCCAACTGGCGGCATCTGGATGCCGGACAGTGGCGATGCGGCCCTCTGGCAGCAAGTCTGCCAGTTGCGCAACGAGGGCCAGCGTGTGGTTCAGGCTCTGCCTGGCCAGCCGTTGAGTGCTGCTCTCGAGGCGGATTGTGATCGGCAATTGATTCAGCAAGACGGGCGCTGGCAGG  <  1:587344/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCCCGTCTTGCTGAATCAATTGCCGATCACAATCCGCCTCGAGAGCAGCACTCAACGGCTGGCCAGGCAGAGCCTGAACCACACGCTGGCCCTCGTTGCGCAACTGGCAGACTTGCTGCCAGAGGGCCGCATCGCCACTGTCCGGCATCCAGATGCCGCCAGTTGGCAATACGACCTCCGCTCGCCCCAGTGTGACCAGGGTCTTCAAATCCGTGGAGAAACCAGTGGCCGGGCGCGCCCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5559338‑5559582 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgggcgcgcccggccaCTGGTTTCTCCACGGATTTGAAGACCCTGGTCACACTGGGGCGAGCGGAGGTCGTATTGCCAACTGGCGGCATCTGGATGCCGGACAGTGGCGATGCGGCCCTCTGGCAGCAAGTCTGCCAGTTGCGCAACGAGGGCCAGCGTGTGGTTCAGGCTCTGCCTGGCCAGCCGTTGAGTGCTGCTCTCGAGGCGGATTGTGATCGGCAATTGATTCAGCAAGACGGGCGCTGGCAGG  <  AE015451/5559562‑5559329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.