New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5567006	52 (0.900)	4 (0.070)	4/328	NT	7.9%	coding (480/1899 nt)	mutL	DNA mismatch repair protein MutL
	?	AE015451	= 5567149	44 (0.800)					coding (337/1899 nt)	mutL	DNA mismatch repair protein MutL

GCGCAGACCGTTGCGCTCGACGTCGATCGGCAGTGCCTGCTCCATGAAGCCCGGGCCGCAGATGGCACCCACCCGCCGTGCACGGGCGATTTCGTCGTGGGCCTCGTGCAGGCTGAGGATGCTCTTGCCATTGTGGCGCAGGTGGAAGCCGACATCGAAACGGGCCAGCGCCAGCCGCCGGATCACTTCCTGCAAGTGATCGAATTCGGTTTTCTCGGCTTTGAGGAACTTGCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5566769‑5567006 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcctgACCCTGACCTCGCGTACCGCCAGTGCCAGTGAGGCCTGGCAAGTAGAAACCGAAGGCCGCGACATGACGCCGCGGGTGCAGCCGGCGGCGCACCCGGTCGGTACCTCGGTGGAAGTGCGCGATTTGTTCTTCAATACCCCGGCCAGGCGCAAGTTCCTCAAAGCCGAGAAAACCGAATTCGATCACTTGCAGGAAGTGATCCGGCGGCTGGCGCTGGCCCGTTTCGATGTCGG  <  AE015451/5567149‑5566917                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCGCAGACCGTTGCGCTCGACGTCGATCGGCAGTGCCTGCTCCATGAAGCCCGGGCCGCAGATGGCACCCACCCGCCGTGCACGGGCGATTTCGTCGTGGGCCTCGTGCAGGCTGAGGATGCTCTTGCCATTGTGGCGCAGGTGGAAGCCGACATCGAAACGGGCCAGCGCCAGCCGCCGGATCACTTCCTGCAAGTGATCGAATTCGGTTTTCTCGGCTTTGAGGAACTTGCGC                                                                                                                                                                                                                                              >  1:770579/1‑235  CGCAGACCGTTGCGCTCGACGTCGATCGGCAGTGCCTGCTCCATGAAGCCCGGGCCGCAGATGGCACCCACCCGCCGTGCACGGGCGATTTCGTCGTGGGCCTCGTGCAGGCTGAGGATGCTCTTGCCATTGTGGCGCAGGTGGAAGCCGACATCGAAACGGGCCAGCGCCAGCCGCCGGATCACTTCCTGCAAGTGATCGAATTCGGTTTTCTCGGCTTTGAGGAACTTGCGCCT                                                                                                                                                                                                                                            <  1:703591/236‑1                     CGTCGATCGGCAGTGCCTGCTCCATGAAGCCCGGGCCGCAGATGGCACCCACCCGCCGTGCACGGGCGATTTCGTCGTGGGCCTCGTGCAGGCTGAGGATGCTCTTGCCATTGTGGCGCAGGTGGAAGCCGACATCGAAACGGGCCAGCGCCAGCCGCCGGATCACTTCCTGCAAGTGATCGAATTCGGTTTTCTCGGCTTTGAGGAACTTGCGCCT                                                                                                                                                                                                                                            <  2:717840/217‑1                                                AGCCCGGGCCGCAGATGGCACCCACCCGCCGTGCACGGGCGATTTCGTCGTGGGCCTCGTGCAGGCTGAGGATGCTCTTGCCATTGTGGCGCAGGTGGAAGCCGACATCGAAACGGGCCAGCGCCAGCCGCCGGATCACTTCCTGCAAGTGATCGAATTCGGTTTTCTCGGCTTTGAGGAACTTGCGCCTGACCCTGACCTCGCGTACCGCCAGTGCCAGTGAGGCCTGGCAAGT                                                                                                                                                                                               >  1:808463/1‑235                                                                                                     GCCTCGTGCAGGCTGAGGATGCTCTTGCCATTGTGGCGCAGGTGGAAGCCGACATCGAAACGGGCCAGCGCCAGCCGCCGGATCACTTCCTGCAAGTGATCGAATTCGGTTTTCTCGGCTTTGAGGAACTTGCGCCTGACCCTGACCTCGCGTACCGCCAGTGCCAGTGAGGCCTG                                                                                                                                                                                                     <  2:808460/176‑1                                                                                                            GCAGGCTGAGGATGCTCTTGCCATTGTGGCGCAGGTGGAAGCCGACATCGAAACGGGCCAGCGCCAGCCGCCGGATCACTTCCTGCAAGTGATCGAATTCGGTTTTCTCGGCTTTGAGGAACTTGCGCCT                                                                                                                                                                                                                                            >  1:410278/1‑130                                                                                                            GCAGGCTGAGGATGCTCTTGCCATTGTGGCGCAGGTGGAAGCCGACATCGAAACGGGCCAGCGCCAGCCGCCGGATCACTTCCTGCAAGTGATCGAATTCGGTTTTCTCGGCTTTGAGGAACTTGCGCCT                                                                                                                                                                                                                                            <  2:410275/130‑1                                                                                                                                       GGCGCAGGTGGAAGCCGACATCGAAACGGGCCAGCGCCAGCCGCCGGATCACTTCCTGCAAGTGATCGAATTCGGTTTTCTCGGCTTTGAGGAACTTGCGCCTGACCCTGACCTCGCGTACCGCCAGTGCCAGTGAGGCCTGGCAAGTAGAAACCGAAGGCCGCGACATGA                                                                                                                                                                        >  1:901388/1‑171                                                                                                                                        GCGCAGGTGGAAGCCGACATCGAAACGGGCCAGCGCCAGCCGCCGGATCACTTCCTGCAAGTGATCGAATTCGGTTTTCTCGGCTTTGAGGAACTTGCGCCTGACCCTGACCTCGCGTACCGCCAGTGCCAGTGAGGCCTGGCAAGTAGAAACCGAA                                                                                                                                                                                     <  2:901385/157‑1                                                                                                                                                                                                                                          GCCTGACCCTGACCTCGCGTACCGCCAGTGCCAGTGAGGCCTGGCAAGTAGAAACCGAAGGCCGCGACATGACGCCGCGGGTGCAGCCGGCGGCGCACCCGGTCGGTACCTCGGTGGAAGT                                                                                                                       >  1:778986/1‑121                                                                                                                                                                                                                                          GCCTGACCCTGACCTCGCGTACCGCCAGTGCCAGTGAGGCCTGGCAAGTAGAAACCGAAGGCCGCGACATGACGCCGCGGGTGCAGCCGGCGGCGCACCCGGTCGGTACCTCGGTGGAAGT                                                                                                                       <  2:778983/121‑1                                                                                                                                                                                                                                            CTGACCCTGACCTCGCGTACCGCCAGTGCCAGTGAGGCCTGGCAAGTAGAAACCGAAGGCCGCGACATGACGCCGCGGGTGCAGCCGGCGGCGCACCCGGTCGGTACCTCGGTGGAAGTGCGCGATTTGTTCTTCAATACCCCGGCCAGGCGCAAGTTCCTCAAAGCCGAGAAAACCGAATTCGATCACTTGCAGGAAGTGATCCGGCGGCTGGCGCTGGCCCGTTTCGATGTCGG  >  1:520158/1‑236                                                                                                                                                                                                                                              GACCCTGACCTCGCGTACCGCCAGTGCCAGTGAGGCCTGGCAAGTAGAAACCGAAGGCCGCGACATGACGCCGCGGGTGCAGCCGGCGGCGCACCCGGTCGGTACCTCGGTGGAAGTGCGCGATTTGTTCTTCAATACCCCGGCCAGGCGCAAGTTCCTCAAAGCCGAGAAAAACGACTTCGATC                                                   >  2:849321/1‑185                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCGCAGACCGTTGCGCTCGACGTCGATCGGCAGTGCCTGCTCCATGAAGCCCGGGCCGCAGATGGCACCCACCCGCCGTGCACGGGCGATTTCGTCGTGGGCCTCGTGCAGGCTGAGGATGCTCTTGCCATTGTGGCGCAGGTGGAAGCCGACATCGAAACGGGCCAGCGCCAGCCGCCGGATCACTTCCTGCAAGTGATCGAATTCGGTTTTCTCGGCTTTGAGGAACTTGCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5566769‑5567006 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcctgACCCTGACCTCGCGTACCGCCAGTGCCAGTGAGGCCTGGCAAGTAGAAACCGAAGGCCGCGACATGACGCCGCGGGTGCAGCCGGCGGCGCACCCGGTCGGTACCTCGGTGGAAGTGCGCGATTTGTTCTTCAATACCCCGGCCAGGCGCAAGTTCCTCAAAGCCGAGAAAACCGAATTCGATCACTTGCAGGAAGTGATCCGGCGGCTGGCGCTGGCCCGTTTCGATGTCGG  <  AE015451/5567149‑5566917

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.