New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5586187	69 (1.200)	3 (0.050)	3/328	NT	4.4%	coding (77/519 nt)	PP_4913	conserved protein of unknown function
	?	AE015451	= 5586238	65 (1.180)					coding (26/519 nt)	PP_4913	conserved protein of unknown function
Rejected: Frequency below/above cutoff threshold.

CACCGGGCTACCGCGCTCCAGGCTCAGTTCATGAGCCAACGCCTCCGGGATCGCCACGTCGGTGGCGCCGGTGTCGAGCATGAAGTGCACCACCTGGCCGTTGATGGCACCATCCACCACGAAGTGGCCCTGGCCATTACTCAGCAGGCGCACTTCGATAAAGCCTTGACCATGCTCGGATTGCACCTGGCGGTTGGGGTTACGCTGGCTGTCTTCCCACTGGCCGAAAAAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5585952‑5586187 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcgcgCGGGCAAGTTACTGATGATCGTCGCCTGGGCGGCGGCGCTGTTTCTTGCCACGCGCTTTTTCGGCCAGTGGGAAGACAGCCAGCGTAACCCCAACCGCCAGGTGCAATCCGAGCATGGTCAAGGCTTTATCGAAGTGCGCCTGCTGAGTAATGGCCAGGGCCACTTCGTGGTGGATGGTGCCATCAACGGCC  <  AE015451/5586238‑5586047                                                                                                                                                                                                                                                                                                                                                                                                                                              CACCGGGCTACCGCGCTCCAGGCTCAGTTCATGAGCCAACGCCTCCGGGATCGCCACGTCGGTGGCGCCGGTGTCGAGCATGAAGTGCACCACCTGGCCGTTGATGGCACCATCCACCACGAAGTGGCCCTGGCCATTACTCAGCAGGCGCACTTCGATAAAGCCTTGACCATGCTCGGATTGCACCTGGCGGTTGGGGTTACGCTGGCTGTCTTCCCACTGGCCGAAAAAGC                                                                                                                                                                                                     <  2:1068255/233‑1         TACCGCGCTCCAGGCTCAGTTCATGAGCCAACGCCTCCGGGATCGCCACGTCGGTGGCGCCGGTGTCGAGCATGAAGTGCACCACCTGGCCGTTGATGGCACCATCCACCACGAAGTGGCCCTGGCCATTACTCAGCAGGCGCACTTCGATAAAGCCTTGACCATGCTCGGATTGCACCTGGCGGTTGGGGTTACGCTGGCTGTCTTCCCACTGGCCGAAAAAG                                                                                                                                                                                                      >  1:931218/1‑224                                                                                                                                                                                           CTGGCGGTTGGGGTTACGCTGGCTGTCTTCCCACTGGCCGAAAAAGCGCGCGGGCAAGTTACTGATGATCGTCGCCTGGGCGGCGGCGCTGTTTCTTGCCACGCGCTTTTTCGGCCAGTGGGAAGACAGCCAGCGTAACCCCAACCGCCAGGTGCAATCCGAGCATGGTCAAGGCTTTATCGAAGTGCGCCTGCTGAGTAAT                                          <  1:825552/202‑1                                                                                                                                                                                           CTGGCGGTTGGGGTTACGCTGGCTGTCTTCCCACTGGCCGAAAAAGCGCGCGGGCAAGTTACTGATGATCGTCGCCTGGGCGGCGGCGCTGTTTCTTGCCACGCGCTTTTTCGGCCAGTGGGAAGACAGCCAGCGTAACCCCAACCGCCAGGTGCAATCCGAGCATGGTCAAGGCTTTATCGAAGTGCGCCTGCTGAGTAAT                                          >  2:825549/1‑202                                                                                                                                                                                                                   GTCTTCCCACTGGCCGAAAAAGCGCGCGGGCAAGTTACTGATGATCGTCGCCTGGGCGGCGGCGCTGTTTCTTGCCACGCGCTTTTTCGGCCAGTGGGAAGACAGCCAGCGTAACCCCAACCGCCAGGTGCAATCCGAGCATGGTCAAGGCTTTATCGAAGTGCGCCTGCTGAGTAATGGCCAGGGCCACTTCGTGGTGGATGGTGCCATCAACGGCC  >  2:907470/1‑218                                                                                                                                                                                                                                       gGCGCGCGGGCAAGTTACGGATGATCGTCGCCTGGGCGGCGGCGCTGTTTCTTGCCACGCGCTTTTTCGGCCAGTGGGAAGACAGACAGCGTAACCCCAACCGCCAGGTGCAATCCGAGCATGGTCAAGGCTTTATCGAAGTGCGCCTGCTGAGTAATGG                                        <  1:218752/159‑1                                                                                                                                                                                                                                           CGCGGGCAAGTTACTGATGATCGTCGCCTGGGCGGCGGCGCTGTTTCTTGCCACGCGCTTTTTCGGCCAGTGGGAAGACAGCCAGCGTAACCCCAACCGCCAGGTGCAATCCGAGCATGGTCAAGGCTTTATCGAAGTGCGCCTGCTGAGTAATGGCCAGGGCCACTTCGTGG                       <  2:884363/173‑1                                                                                                                                                                                                                                            GCGGGCAAGTTACTGATGATCGTCGCCTGGGCGGCGGCGCTGTTTCTTGCCACGCGCTTTTTCGGCCAGTGGGAAGACAGCCAGCGTCACCCCAACCGCCAGGTGCAATCCGAGCATGGTCAAGG                                                                      >  2:83012/1‑125                                                                                                                                                                                                                                                                                                                                                                                                                                              CACCGGGCTACCGCGCTCCAGGCTCAGTTCATGAGCCAACGCCTCCGGGATCGCCACGTCGGTGGCGCCGGTGTCGAGCATGAAGTGCACCACCTGGCCGTTGATGGCACCATCCACCACGAAGTGGCCCTGGCCATTACTCAGCAGGCGCACTTCGATAAAGCCTTGACCATGCTCGGATTGCACCTGGCGGTTGGGGTTACGCTGGCTGTCTTCCCACTGGCCGAAAAAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5585952‑5586187 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcgcgCGGGCAAGTTACTGATGATCGTCGCCTGGGCGGCGGCGCTGTTTCTTGCCACGCGCTTTTTCGGCCAGTGGGAAGACAGCCAGCGTAACCCCAACCGCCAGGTGCAATCCGAGCATGGTCAAGGCTTTATCGAAGTGCGCCTGCTGAGTAATGGCCAGGGCCACTTCGTGGTGGATGGTGCCATCAACGGCC  <  AE015451/5586238‑5586047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.