New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5611082 =	49 (0.850)	3 (0.050)	3/328	NT	6.1%	coding (76/1176 nt)	PP_4931	conserved protein of unknown function
	?	AE015451	5611134 =	46 (0.830)					coding (128/1176 nt)	PP_4931	conserved protein of unknown function

TTCGCCGTTGCCGGCCAAGGCCTCGCGCCAGCGGCGCGGCATGTCGGCGATGGCTTCCGAGGCGCCGGTCAGGGCGCCGTGCAGGGCGTATTTGGTGCCGCCGTGGATGATGCCCTGCGACTTGATGGTCTGCTCGCCGCCAAGGCTGGCGCGCTCCACCAGCACTGTCGAGTAGCCCAGGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5611267‑5611082 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcgAGCAGACCATCAAGTCGCAGGGCATCATCCACGGCGGCACCAAATACGCCCTGCACGGCGCCCTGACCGGCGCCTCGGAAGCCATCGCCGACATGCCGCGCCGCTGGCGCGAGGCCTTGGCCGGCAACGGCGAACTCGACCTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGC  >  AE015451/5611134‑5611356                                                                                                                                                                                                                                                                                                                                                                                                                           TTCGCCGTTGCCGGCCAAGGCCTCGCGCCAGCGGCGCGGCATGTCGGCGATGGCTTCCGAGGCGCCGGTCAGGGCGCCGTGCAGGGCGTATTTGGTGCCGCCGTGGATGATGCCCTGCGACTTGATGGTCTGCTCGCCGCCAAGGCTGGCGCGCTCCACCAGCACTGTCGAGTAGCCCAGGCG                                                                                                                                                                                                                                    <  2:857069/183‑1                                                                                                                          TTGATGGTCTGCTCGCCGCCAAGGCTGGCGCGCTCCACCAGCACTGTCGAGTAGCCCAGGCGGCGAGCAGACCATCAAGTCGCAGGGCATCATCCACGGCGGCACCAAATACGCCCTGCACGGCGCCCTGACCGGCGCCTCGGAAGCCATCGCCGACATGCCGCGCCGCTGGCGCGAGGCCTTGGCCGGCAACGGCGAACTCGACCTCAGTCGTACCCGCCTGCTCTCCGATGCC                                                       <  1:766026/235‑1                                                                                                                               GGTCTGCTCGCCGCCAAGGCTGGCGCGCTCCACCAGCACTGTCGAGTAGCCCAGGCGGCGAGCAGACCATCAAGTCGCAGGGCATCATCCACGGCGGCACCAAATACGCCCTGCACGGCGCCCTGACCGGCGCCTCG                                                                                                                                                    >  2:766023/1‑137                                                                                                                                                                              AGCCCAGGCGGCGAGCAGACCATCAAGTCGCAGGGCATCATCCACGGCGGCACCAAATACGCCCTGCACGGCGCCCTGACCGGCGCCTCGGAAGCCATCGCCGACATGCCGCGCCGCTGGCGCGAGGCCTTGGCCGGCAACGGCGAACTCGACCTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGC  >  1:1012668/1‑236                                                                                                                                                                                                                                                                                                                                                                                                                           TTCGCCGTTGCCGGCCAAGGCCTCGCGCCAGCGGCGCGGCATGTCGGCGATGGCTTCCGAGGCGCCGGTCAGGGCGCCGTGCAGGGCGTATTTGGTGCCGCCGTGGATGATGCCCTGCGACTTGATGGTCTGCTCGCCGCCAAGGCTGGCGCGCTCCACCAGCACTGTCGAGTAGCCCAGGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5611267‑5611082 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcgAGCAGACCATCAAGTCGCAGGGCATCATCCACGGCGGCACCAAATACGCCCTGCACGGCGCCCTGACCGGCGCCTCGGAAGCCATCGCCGACATGCCGCGCCGCTGGCGCGAGGCCTTGGCCGGCAACGGCGAACTCGACCTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGC  >  AE015451/5611134‑5611356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.