New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5854580 =	81 (1.410)	3 (0.050)	3/328	NT	3.8%	coding (600/1392 nt)	tcyP	sodium‑cystine symporter
	?	AE015451	5854624 =	74 (1.340)					coding (644/1392 nt)	tcyP	sodium‑cystine symporter
Rejected: Frequency below/above cutoff threshold.

CGTGCACCACGAACATCAACCCCAGGCCCAGGTACGACACCACCACGAAGCTGCCCAGCTTGAGGATGTCCTCCGTGTTGGAACTGGCCACTACTTTGGTCATCAACGCCAGCACGCCATAGGGGGTCAGCTTCATCACGACCCGCACCAGGCGCATTACCCAGGCCTGCAGGGTGTCGATGGCCGACAGGGCGCGCTCGCCCTTCTCGGCGTCGTCCTTGATCAAGTGGAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5854815‑5854580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgcgCCCTGTCGGCCATCGACACCCTGCAGGCCTGGGTAATGCGCCTGGTGCGGGTCGTGATGAAGCTGACCCCCTATGGCGTGCTGGCGTTGATGACCAAAGTAGTGGCCAGTTCCAACACGGAGGACATCCTCAAGCTGGGCAGCTTCGTGGTGGTGTCGTACCTGGGCCTGGGGTTGATGTTCGTGGTGCACGGCATCATCCTCGCCGCCACCGGCGTGAGCCCGCTG  >  AE015451/5854624‑5854850                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGTGCACCACGAACATCAACCCCAGGCCCAGGTACGACACCACCACGAAGCTGCCCAGCTTGAGGATGTCCTCCGTGTTGGAACTGGCCACTACTTTGGTCATCAACGCCAGCACGCCATAGGGGGTCAGCTTCATCACGACCCGCACCAGGCGCATTACCCAGGCCTGCAGGGTGTCGATGGCCGACAGGGCGCGCTCGCCCTTCTCGGCGTCGTCCTTGATCAAGTGGAGCGCG                                                                                                                                                                                                                                     <  1:612759/236‑1                                              CGAAGCTGCCCAGCTTGAGGATGTCCTCCGTGTTGGAACTGGCCACTACTTTGGTCATCAACGCCAGCACGCCATAGGGGGTCAGCTTCATCACGACCCGCACCAGGCGCATTACCCAGGCCTGCAGGGTGTCGATGGCCGACAGGGCGCGCTCGCCCTTCTCGGCGTCGTCCTTGATCAAGTGGAGCGC                                                                                                                                                                                                                                      >  1:247530/1‑190                                              CGAAGCTGCCCAGCTTGAGGATGTCCTCCGTGTTGGAACTGGCCACTACTTTGGTCATCAACGCCAGCACGCCATAGGGGGTCAGCTTCATCACGACCCGCACCAGGCGCATTACCCAGGCCTGCAGGGTGTCGATGGCCGACAGGGCGCGCTCGCCCTTCTCGGCGTCGTCCTTGATCAAGTGGAGCGC                                                                                                                                                                                                                                      <  2:247527/190‑1                                                 AGCGGCCCAGCTTGAGGATGTCCTCCGTGTTGGAACTGGCCACTACTTTGGTCATCAACGCCAGCACGCCATAGGGGGTCAGCTTCATCACGACCCGCACCAGGCGCATTACCCAGGCCTGCAGGGTGTCGATGGCCGACAGGGCGCGCTCGCCCTTCTCGGCGTCGTCCTTGATCAAGTGGAGCGCG                                                                                                                                                                                                                                     <  2:782904/188‑1                                                                                                                                          ACGACCCGCACCAGGCGCATTACCCAGGCCTGCAGGGTGTCGATGGCCGACAGGGCGCGCTCGCCCTTCTCGGCGTCGTCCTTGATCAAGTGGAGCGCGGCCTGTCGGCCATCGACACCCTGCAGGCCTGGGTAATGCGCCTGGTGCGGGTCGTGATGAAG                                                                                                                                                                       <  1:1006442/161‑1                                                                                                                                                                CCCAGGCCTGCAGGGTGTCGATGGCCGACAGGGCGCGCTCGCCCTTCTCGGCGTCGTCCTTGATCAAGTGGAGCGCGCCCTGTCGGCCATCGACACC                                                                                                                                                                                                                 <  2:166539/97‑1                                                                                                                                                                              GTGTCGATGGCCGACACGGCGCGCTCGCCCTTCTCGGGGTCGTCCTTGATCAAGTGGAGCGCGCCCTGTCGGCCATCGACACCCTGCAGGCCTGGGTAATGCGCCTGGTGCGGGTCG                                                                                                                                                                               <  1:503051/117‑1                                                                                                                                                                                                                                      ggGCGCGCCCGGTCGGCCATCGACACCCTGCAGGCCTGGGTAATGCGCCTGGTGCGGGTCGTGATGAAGCTGACCCCCTATGGCGTGCTGGCGTTGATGACCAAAGTAGTGGCCAGTTCCAACACGGAGGACATCCTCAAGCTGGGCAGCTTCGTGGTGGTGTCGTACCTGGGCCTGGGGTTGATGTTCGTGGTGCACGGCATCATCCTCGCCGCCACCGGCGTGAGCCCGCTG  <  2:835322/232‑1                                                                                                                                                                                                                                         CGCGCCCTGTCGGCCATCGACACCCTGCAGGCCTGGGTAATGCGCCTGGTGCGGGTCGTGATGAAGCTGACCCCCTATGGCGTGCTGGCGTTGATGACCAAAGTAGTGGCCAGTTCCAACACGGAGGACATCCTCAAGCTGGGCAGCTTCGTGGTGGTGTCGTACCTGGGCCTGGGGTTGATGTTCGTG                                            >  2:105192/1‑189                                                                                                                                                                                                                                         CGCGCCCTGTCGGCCATCGACACCCTGCAGGCCTGGGTAATGCGCCTGGTGCGGGTCGTGATGAAGCTGACCCCCTATGGCGTGCTGGCGTTGATGACCAAAGTAGTGGCCAGTTCCAACACGGAGGACATCCTCAAGCTGGGCAGCTTCGTGGTGGTGTCGT                                                                      <  2:445895/163‑1                                                                                                                                                                                                                                          GCGCCCTGTCGGCCATCGACACCCTGCA                                                                                                                                                                                                            <  2:418614/28‑1                                                                                                                                                                                                                                           CGCCCTGTCGGCCATCGACACCCTGCAGGCCTGGGTAATGCGCCTGGTGCGGGTCGTGATGAAGCTGACCCCCTATGGCGTGCTGGCGTTGATGACCAAAGTAGTGGCCAGTTCCAACACGGAGGACATCCTCAAGCTGGGCAGCTTCGTGGTGGTGTCGTACCTGGGCCTGGGGTTGATGTTCGTGGTGC                                        <  2:956129/191‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGTGCACCACGAACATCAACCCCAGGCCCAGGTACGACACCACCACGAAGCTGCCCAGCTTGAGGATGTCCTCCGTGTTGGAACTGGCCACTACTTTGGTCATCAACGCCAGCACGCCATAGGGGGTCAGCTTCATCACGACCCGCACCAGGCGCATTACCCAGGCCTGCAGGGTGTCGATGGCCGACAGGGCGCGCTCGCCCTTCTCGGCGTCGTCCTTGATCAAGTGGAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5854815‑5854580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgcgCCCTGTCGGCCATCGACACCCTGCAGGCCTGGGTAATGCGCCTGGTGCGGGTCGTGATGAAGCTGACCCCCTATGGCGTGCTGGCGTTGATGACCAAAGTAGTGGCCAGTTCCAACACGGAGGACATCCTCAAGCTGGGCAGCTTCGTGGTGGTGTCGTACCTGGGCCTGGGGTTGATGTTCGTGGTGCACGGCATCATCCTCGCCGCCACCGGCGTGAGCCCGCTG  >  AE015451/5854624‑5854850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.