New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 5940443 | 51 (0.880) | 3 (0.050) | 3/328 | NT | 4.8% | coding (282/1113 nt) | yhhJ | putative translation related protein |
? | AE015451 | = 5940488 | 70 (1.270) | coding (327/1113 nt) | yhhJ | putative translation related protein | |||||
Rejected: Frequency below/above cutoff threshold. |
GACCAGCCTGCGCCATGACAGCGTCCTGCTGCTGTTCCTGCTATATGCCTTCAGCGTGGCGATCTACATGCCGGCAGCCGGCTCGGTGATCGGCGTACACAACGCCAGCGTGGCGGTGGTGGATGAAGACCATAGCCTGCTCTCGCGCAAGCTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5940206‑5940443 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccagCAGGTCGCTCTGGAAGTTAACCGGCACGTTGATGACGAAGGTGTACTGGCCGCTGTCCATGGCCTGGTCCAGGCGCTGCGGAGGCAGCGGCACGGCTGGCTGGAACTCGGGCGGTTGCAGGGCTTCGCTGAGCTTGCGCGAGAGCAGGCTATGGTCTTCATCCACCACCGCCACGCTGGCGTTGTGTACGCCGATCACCGAGCCGGCTGCCGGCATGTAGATCGCCACGC < AE015451/5940488‑5940259 GACCAGCCTGCGCCATGACAGCGTCCTGCTGCTGTTCCTGCTATATGCCTTCAGCGTGGCGATCTACATGCCGGCAGCCGGCTCGGTGATCGGCGTACACAACGCCAGCGTGGCGGTGGTGGATGAAGACCATAGCCTGCTCTCGCGCAAGCTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGC > 1:404662/1‑235 GACCAGCCTGCGCCATGACAGCGTCCTGCTGCTGTTCCTGCTATATGCCTTCAGCGTGGCGATCTACATGCCGGCAGCCGGCTCGGTGATCGGCGTACACAACGCCAGCGTGGCGGTGGTGGATGAAGACCATAGCCTGCTCTCGCGCAAGCTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGC > 1:593482/1‑235 CTGCGCCATGACAGCGTCCTGCTGCTGTTCCTGCTATATGCCTTCAGCGTGGCGATCTACATGCCGGCAGCCGGCTCGGTGATCGGCGTACACAACGCCAGCGTGGCGGTGGTGGATGAAGACCATAGCCTGCTCTCGCGCAAGCTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGC < 2:1087319/225‑1 GTGGGGGATGAAGACCATAGCCTGCTCTCGCGCAAGCTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAG > 2:293418/1‑123 TGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGCAGGGCGCTCTGGGAGTTAACCGGCACGTTGATGACGAAGGTGTACTGGGCGCTGTCCATGGCCTGGTCCAGGCGCTGCGGGGGCAGCGGCACCGCTGGCTGGGACTCGGGCGG > 1:584545/1‑161 CGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAGCAGGTCGCTCTGGAAGTTAACCGGCACGTTGATGACGAAGGTGTACTGGCCGCTGTCCATGGCCTGGTCCAGGCGCGGCGGAGGCAGCGGCACGGCTGGCTGGAACTCGGGCGGTTGCAGGGC > 2:514301/1‑167 CCATGGACAGCGGCCAGCAGGTCGCTCTGGAAGTTAACCGGCACGTTGATGACGAAGGTGTACTGGCCGCTGTCCATGGCCTGGTCCAGGCGCTGCGGAGGCAGCGGCACGGCTGGCTGGAACTCGGGCGGTTGCAGGGCTTCGCTGAGCTTGCGCGAGAGCAGGCTATGGTCTTCATCCACCACCGCCACGCTGGCGTTGTGTACGCCGATCACCGA > 2:404659/1‑218 GCCAGCAGGTCGCTCTGGAAGTTAACCGGCACGTTGATGACGAAGGTGTACTGGCCGCTGTCCATGGCCTGGTCCAGGCGCTGCGGAGGCAGCGGCACGGCTGGCTGGAACTCGGGCGGTTGCAGGGCTTCGCTGAGCTTGCGCGAGAGCAGGCTATGGTCTTCATCCACCACCGCCACGCTGGCGTTGTGTACGCCGATCACCGAGCCGGCTGCCGGCATGTAGATCGCCACGC < 1:718888/235‑1 GACCAGCCTGCGCCATGACAGCGTCCTGCTGCTGTTCCTGCTATATGCCTTCAGCGTGGCGATCTACATGCCGGCAGCCGGCTCGGTGATCGGCGTACACAACGCCAGCGTGGCGGTGGTGGATGAAGACCATAGCCTGCTCTCGCGCAAGCTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGCCTCCGCAGCGCCTGGACCAGGCCATGGACAGCGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5940206‑5940443 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccagCAGGTCGCTCTGGAAGTTAACCGGCACGTTGATGACGAAGGTGTACTGGCCGCTGTCCATGGCCTGGTCCAGGCGCTGCGGAGGCAGCGGCACGGCTGGCTGGAACTCGGGCGGTTGCAGGGCTTCGCTGAGCTTGCGCGAGAGCAGGCTATGGTCTTCATCCACCACCGCCACGCTGGCGTTGTGTACGCCGATCACCGAGCCGGCTGCCGGCATGTAGATCGCCACGC < AE015451/5940488‑5940259 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |