New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 607077674 (1.280)3 (0.060) 3/322 NT 4.0% intergenic (‑132/+31) PP_5324/phoU Response regulator/phosphate transport‑associated protein
?AE015451 = 6070778 73 (1.350)intergenic (‑134/+29) PP_5324/phoU Response regulator/phosphate transport‑associated protein
Rejected: Frequency below/above cutoff threshold.

ACGGGGCGTCATCCACGACCAGCACATTCACTTTACTCATCGATACTCCTTTTGAATCCCGACTAGCCTACTGCCAATGATGGCCACTTGCTACAACCTGGTCACGCCGGGACTTCTTCACATCGTTCGCGGGTGCCTGCCGGCTCTCGACCGCAAACGAAAACGCCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/6070605‑6070776
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcccggccTTGGCCGGGCGTTTTCGTTTGCGGTCGAGAGCCGGCAGGCACCCGCGAACGATGTGAAGAAGTCCCGGCGTGACCAGGTTGTAGCAAGTGGCCATCATTGGCAGTAGGCTAGTCGGGATTCAAAAGGAGTATCGATGAGTAAAGTGAATGTGCTGGTCGTGGATGACGCCCCGTTTATCCGTGATCTGGTCCGCAAGTGTCTGCGTAATGCCTTCCCGGGTATGGCCATCGA  <  AE015451/6070778‑6070547
                                                                                                                                                                                                                                                                                                                                                                                                                    
ACGGGGCGTCATCCACGACCAGCACATTCACTTTACTCGTCGATCCTCCTTTTGAATCCCGACTAGCCTACTGCCAATGATGGCCACTTGCTACAACCTGGTCACGCCGGGACTTCTTCACATCGTTCGCGGGTGCCTGCCGGCTCTCGACCGCAAACGAAAAC                                                                                                                                                                                                                                                  <  2:72697/164‑1
                                                     GAATCCCGACTAGCCTACTGCCAATGATGGCCACTTGCTACAACCTGGTCACGCCGGGACTTCTTCACATCGTTCGCGGGTGCCTGCCGGCTCTCGACCGCAAACGAAAACGCCC                                                                                                                                                                                                                                              >  1:816116/1‑115
                                                                                                      CACGCCGGGACTTCTTCACATCGTTCGCGGGTGCCTGCCGGCTCTCGACCGCAAACGAAAACGCCCGGCCTTGGCCGGGCGTGTTCGTTTGCGGTCGCGAGCCGGCAGGCACCCGCGAACGATGTGAAGAAGTCC                                                                                                                                                                         >  1:323078/1‑135
                                                                                                                                          GCCGGCTCTCGACCGCAAACGAAAACGCCCGGCCTTGGCCGGGCGTTTTCGTTTGCGGTCGAGAGAAGGCATGCACC                                                                                                                                                                                               >  1:370591/1‑77
                                                                                                                                                        GCAAACGAAAACGCCCGGCCTTGGCCGGGCGGTTTCGGTTGCGGTCGAGAGCCGGCAGGCACCCGCGAACGgt                                                                                                                                                                                     >  2:113124/1‑71
                                                                                                                                                                  ACGCCCGGCCTTTGCCGGGCGTTTTCGTTTG                                                                                                                                                                                                                     >  2:881415/1‑31
                                                                                                                                                                   CGCCCGGCCTTGGCCGGGCGTTTTCGTTTGCGGTCGAGAGCCGGCAGGCACCCGCGAACGATGTGAAGAAGTCCCGGCGTGACCAGGTTGTAGCAAGTGGCCATCATTGGCAGTAGGCTAGTCGGGATTCAAAAGGAGTATCGATGAGTAAAGTGAATGTGCTGGTCGTGGATGACGCCCCGTTTATCCGTGATCTGGTCCGCAAGTGTCTGCGTAATGCCTTCCCGGGTATGGCC       >  1:788839/1‑236
                                                                                                                                                                        GGCCGTGGCCGGGCGTTTTCGTGTGCGGTCGAGAGCCGGCAGGCACCCGCGAACGATGTGAAGAAGTCCCGGCGTGACCAGGTTGTAGCAAGTGGCCATCATTGGCAGTAGGCTAGTCGGGATTCAAAAGGAGTATCGATGAGTAAAGTGAATGTGCTGGTCGTGGATGACGCCCCGTTTATCCGTGATCTGGTCCGCAAGTGTCTGCGTAATGCCTTCCCGGGTATGGCCATCGA  <  1:113126/236‑1
                                                                                                                                                                                                                                                                                                                                                                                                                    
ACGGGGCGTCATCCACGACCAGCACATTCACTTTACTCATCGATACTCCTTTTGAATCCCGACTAGCCTACTGCCAATGATGGCCACTTGCTACAACCTGGTCACGCCGGGACTTCTTCACATCGTTCGCGGGTGCCTGCCGGCTCTCGACCGCAAACGAAAACGCCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/6070605‑6070776
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcccggccTTGGCCGGGCGTTTTCGTTTGCGGTCGAGAGCCGGCAGGCACCCGCGAACGATGTGAAGAAGTCCCGGCGTGACCAGGTTGTAGCAAGTGGCCATCATTGGCAGTAGGCTAGTCGGGATTCAAAAGGAGTATCGATGAGTAAAGTGAATGTGCTGGTCGTGGATGACGCCCCGTTTATCCGTGATCTGGTCCGCAAGTGTCTGCGTAATGCCTTCCCGGGTATGGCCATCGA  <  AE015451/6070778‑6070547

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.