New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2274562 =	28 (0.490)	4 (0.070)	4/332	NT	12.5%	coding (928/1119 nt)	PP_2005	conserved exported protein of unknown function
	?	AE015451	2274588 =	29 (0.520)					coding (902/1119 nt)	PP_2005	conserved exported protein of unknown function

CAACCGACAGTTCGCCCAGGCGCACGCGGGGGCGGGCCATGGGTTTACAACCACACATTCAACAGGCGGGCGCCTGGGCTGGGGGGGCCGGCGAGCAACGCTCCCGACTGGCGAGCAAAGCCCTGGCCATCGCTGCCCTGTTCCCAGAACTGCCCGCGCATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGCGACCAGTTGTACGGCTTGTTCAGTCAGTTGCTGGTGGTTTTCCGGGTACCAGCTGTCACTGCCCACCAGTATCCCGAGG  >  AE015451/2274327‑2274740                                                                                                                                                                                                                                            |                                                                                                                                                                                   aatatcccgacagtgaaatgcgccgctacgtccaccacggccgccagcacccgctgcaggtcgtgcagaccccggccgggcgcctcgggatactggtgggcagtgacagctggtacccggaaaaccaccagcaactgactgaacaagccgtacaactggtcgccaacccggcgtttctcagtggcaagggcagctggcaagcaccctggcggggaaatcgccatcaggatgccagc                                                                                                                                                                                    <  1:766071‑M1/1‑1 (MQ=255)      cccgacagtgaaatgcgccgctacgtccaccacggccgccagcacccgctgcaggtcgtgcagaccccggccgggcgcctcgggatactggtgggcagtgacagctggtacccggaaaaccaccagcaactgactgaacaagccgtacaactggtcgccaacccggcgtttctcagtggcaagggcagctggcaagcaccctggcggggaaatcgccatcaggatgccagcgccg                                                                                                                                                                                >  1:788869‑M1/231‑235 (MQ=255)                                                                aGGCGGGCGCCTGGGCTGGGGGGGCCGGCGAGCAACGCTCCCGACTGGCGAGCAAAGCCCTGGCCATCGCTGCCCTGTTCCCAGAACTGCCCGCGCATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGc                                                                                                                                >  1:451500/1‑225 (MQ=255)                                                                      gcgcCTGGGCTGGGGGGGCCGGCGAGCAACGCTCCCGACTGGCGAGCAAAGCCCTGGCCATCGCTGCCCTGTTCCCAGAACTGCCCGCGCATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGca                                                                                                               >  2:826162/1‑235 (MQ=255)                                                                        gcCTGGGCTGGGGGGGCCGGCGAGCAACGCTCCCGACTGGCGAGCAAAGCCCTGGCCATCGCTGCCCTGTTCCCAGAACTGCCCGCGCATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGc                                                                                                             >  1:401947/1‑236 (MQ=255)                                                                          ctgggctgggGGGGCCGGCGAGCAACGCTCCCGACTGGCGAGCAAAGCCCTGGCCATCGCTGCCCTGTTCCCAGAACTGCCCGCGCATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGgcgc                                                                                                                                                          <  1:813156/189‑1 (MQ=255)                                                                                     gggCCGGCGAGCAACGCTCCCGACTGGCGAGCAAAGCCCTGGCCATCGCTGCCCTGTTCCCAGAACTGCCCGCGCATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTga                                                                                                 >  1:578592/1‑235 (MQ=255)                                                                                       gCCGGCGAGCAACGCTCCCGACTGGCGAGCAAAGCCCTGGCCATCGCTGCCCTGTTCCCAGAACTGCCCGCGCATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCcgcg                                                                                                                                                                              >  2:813153/1‑156 (MQ=255)                                                                                          ggCGAGCAACGCTCCCGACTGGCGAGCAAAGCCCTGGCCATCGCTGCCCTGTTCCCAGAACTGCCCGCGCATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTg                                                                                                                                                                           >  2:428851/1‑156 (MQ=255)                                                                                           gCGAGCAACGCTCCCGACTGGCGAGCAAAGCCCTGGCCATCGCTGCCCTGTTCCCAGAACTGCCCGCGCATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGcgc                                                                                                                                                                        >  2:227793/1‑156 (MQ=255)                                                                                             gAGCAACGCTCCCGACTGGCGAGCAAAGCCCTGGCCATCGCTGCCCTGTTCCCAGAACTGCCCGCGCATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGcc                                                                                         <  1:826165/235‑1 (MQ=255)                                                                                                cAACGCTCCCGACTGGCGAGCAAAGCCCTGGCCATCGCTGCCCTGTTCCCAGAACTGCCCGCGCTTGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCg                                                                                        <  2:572220/233‑1 (MQ=255)                                                                                                    gCTCCCGACTGGCGATCAAAGCCCTGGCCATCGCTGCCCTGTTCCCAGAACTGCCCGCGCATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTcgccg                                                                                                                                                                                >  2:515573/1‑141 (MQ=255)                                                                                                    gCTCCCGACTGGCGAGCAAAGCCCTGGCCATCGCTGCCCTGTTCCCAGAACTGCCCGCGCATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTg                                                                                   <  2:648884/234‑1 (MQ=255)                                                                                                                          ccTGGCCATCGCTGCCCTGTTCCCAGAACTGCCCGCGCATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGCGACCAGTTGTACGGCTTGTtc                                                            <  1:764017/235‑1 (MQ=255)                                                                                                                                                          ccGCGCATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGAt                                                                                                                                              >  2:201434/1‑121 (MQ=255)                                                                                                                                                          ccGCGCATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGCGACCAGt                                                                          >  1:290105/1‑189 (MQ=255)                                                                                                                                                          ccGCGCATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGCGACCAGTTGTACGGCTTGTTCAGTCAGTTGCtggtg                                             >  2:680890/1‑218 (MQ=255)                                                                                                                                                          ccGCGCATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGCGACCAGTTGTACGGCTTGTTCAGTCAGTTGCTGGTGGTTTTCCGGGTACCAg                             >  1:22135/1‑234 (MQ=255)                                                                                                                                                          ccGCGCATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGCGACCAGTTGTACGGCTTGTTCAGTCAGTTGCTGGTGGTTTTCCGGGTACCAGc                            >  1:916077/1‑235 (MQ=255)                                                                                                                                                            gcgcATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGCGACCAGTTGTACGGCTTGTTCAGTCAGTTGCTGGTGGTTTTCCGGGTACCAGCTg                          >  1:809680/1‑235 (MQ=255)                                                                                                                                                                 tGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGCGACCAGTTGTACGGCTTGTTCAGTCAGTTGCTGGTGGTTTTCCGGGTACCAGCTGTCACTg                    >  1:9043/1‑236 (MQ=255)                                                                                                                                                                             tgctgcTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGCGACCAGTTGTACGGCTTGTTCAGTCAGTTGCTGGTGGTTTTCCGGGTACCAGCTGTCACTGCCCACCAGTATc        >  1:751744/1‑236 (MQ=255)                                                                                                                                                                               ctgctgATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGCGACCAGTTGTACGGCTTGTTCAGTCAGTTGCTGGTGGTTTTCCGGGTACCAGCTGTCACTGCCCACCAGTATcc       >  1:756981/1‑235 (MQ=255)                                                                                                                                                                                         caagggcagctggcaagcaccctggcggggaaatcgccatcatgatgccagCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCGTCCGGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGCGACCAGt                                                                          >  1:610293‑M1/52‑158 (MQ=255)                                                                                                                                                                                                  ccACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCa                                                                                                     >  1:847051/1‑122 (MQ=255)                                                                                                                                                                                                   cACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTcgcc                                                                                                                                                                                 >  1:428854/1‑45 (MQ=255)                                                                                                                                                                                                      caagcaccctggcggggaaatcgccatcaggaggccagCGCCGCGCTGCAAGGCCAGCCCAGCGCTGGCATCCTGATGGCGGTTTCCCCGCCAGGGTGCTTGCCAGCTGccc                                                                                                           <  2:610290‑M1/74‑1 (MQ=255)                                                                                                                                                                                                             cctggcggggaaatcgccatcaggatgccagCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGCGACCAGTTGTACGGCTTGTTCAGTCAGTTGCTGGTGGTTTTCCGGGTAc                                >  2:1058164‑M1/32‑180 (MQ=255)                                                                                                                                                                                                             cctggcggggaaatcgccatcaggatgccagCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGCGACCAGTTGTACGGCTTGTTCAGTCAGTTGCTGGTGGTTTTCCGGGTAc                                <  1:1058167‑M1/149‑1 (MQ=255)                                                                                                                                                                                                                   tGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGCGACCCGTTGTACGGCTTGTTCAGTCAGTTGCtgggg                                             >  2:312551/1‑159 (MQ=255)                                                                                                                                                                                                                            gTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGc                                                                                 <  1:994793/116‑1 (MQ=255)                                                                                                                                                                                                                            gTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGc                                                                                 >  2:994790/1‑116 (MQ=255)                                                                                                                                                                                                                             tCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGgcgc                                                                                                                                                          <  2:479180/42‑1 (MQ=255)                                                                                                                                                                                                                                  tCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGCGACCAGTTGTACGGCTTGTTCAGTCAGTTGCTGGTGGTTTTCCGGGTACCAGCTGTCCCTGCCCACCAGTATCCCGAgg  >  2:778069/1‑189 (MQ=255)                                                                                                                                                                                                                                      tGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCGTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGCGACCAGTTGTACGGCTTGTTCAGTCAGTTGCTGGTGGTTTTcc                                      >  2:969883/1‑149 (MQ=255)                                                                                                                                                                                                                                       gACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGCGAAACGCCGGGTTGGCGACCAGTTGTACGGCTTGTTCAGTCAGTTGCTGGTGGTTTTCCGGGTACCCGCTGTCACTTCccacca             >  2:138122/1‑173 (MQ=255)                                                                                                                                                                                                                                          ttCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATg                                                                                                                                             >  1:479183/1‑42 (MQ=255)                                                                                                                                                                                                                                           tCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGCGACCAGTTGTACGGCTTGTTCAGTCAGTTGCTGGTGGTTTTCCGGGTGCCAGCTGt                         >  2:993912/1‑157 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                   CAACCGACAGTTCGCCCAGGCGCACGCGGGGGCGGGCCATGGGTTTACAACCACACATTCAACAGGCGGGCGCCTGGGCTGGGGGGGCCGGCGAGCAACGCTCCCGACTGGCGAGCAAAGCCCTGGCCATCGCTGCCCTGTTCCCAGAACTGCCCGCGCATGAACACGCTCATGCTGCTGATGCCGGTTCCGGCCACTTCGGTCAGGCGTTGCCAAGCCGTCTGTTCACTGACTTCGCCGCGCTGCAAGGCCAGCCCGGCGCTGGCATCCTGATGGCGATTTCCCCGCCAGGGTGCTTGCCAGCTGCCCTTGCCACTGAGAAACGCCGGGTTGGCGACCAGTTGTACGGCTTGTTCAGTCAGTTGCTGGTGGTTTTCCGGGTACCAGCTGTCACTGCCCACCAGTATCCCGAGG  >  AE015451/2274327‑2274740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.