New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4808179	0 (0.000)	15 (0.280)	11/318	NT	42.9%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	AE015451	5988765 =	40 (0.750)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

GCTTGAGAAAAGCTGACCTTGGCGTCAACTTTACAGCAATTGGGTGGGTAGAGGCAAAGTCAAGCTGACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACAAACTCTTACTACTCCTG  >  AE015451/4807944‑4808361                                                                                                                                                                                                                                            |                                                                                                                                                                                       gCTTGAGAAAAGCTGACCTTGGCGTCAACTTTACAGCAATTGGGTGGGTAGAGGCAAAGTCAAGCTGACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCG                                                                                                                                                                                        <  1:418151‑M1/236‑1 (MQ=255)         aaaGCTGACCTTGGCGTCAACTTTACAGCAATTGGGTGGGTAGAGGCAAAGTCAAGCTGACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgctc                                                                                                                                                                                <  1:407287‑M1/236‑9 (MQ=255)                                        ttGGGTGGGTAGAGGCAAAGTCAAGCTGACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttc                                                                                                                                                  <  1:717504‑M1/235‑39 (MQ=255)                                          gggtgggtAGAGGCAAAGTCAAGCTGACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgg                                                                                                                                                >  1:478475‑M1/1‑195 (MQ=255)                                                          aGTCAAGCTGACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaa                                                                                                                                                                       <  1:831583‑M1/196‑18 (MQ=255)                                                            tCAAGCTGACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggta                                                                                                                                                                        >  2:63167‑M1/1‑177 (MQ=255)                                                                                    tgtATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcg                                                                                                                                                                            <  2:634177‑M1/165‑13 (MQ=255)                                                                                      tataGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatg                                                                                                   <  1:63169‑M1/236‑86 (MQ=255)                                                                                               aTGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgt                                                                                                                                                         >  2:967773‑M1/1‑142 (MQ=255)                                                                                                 gggCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatc                                                                                         <  1:179496‑M1/235‑96 (MQ=255)                                                                                                   gCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGc                                                                                                                                                                                       >  2:498941‑M1/1‑138 (MQ=255)                                                                                                        aTTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGTGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcggccagtccc                                                                                                                                        <  2:591510‑M1/181‑49 (MQ=255)                                                                                                                      gatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCCAAAttcaa                                                                                             <  1:62589‑M1/98‑3 (MQ=255)                                                                                                                      gatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTccacc                                                                     <  1:19803‑M1/122‑3 (MQ=255)                                                                                                                                          gTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggag                                               >  1:744854‑M1/1‑99 (MQ=255)                                                                                                                                                   ctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttACCCGCGGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCCCTCaaaa                                                                                                  <  2:125031‑M1/93‑1 (MQ=255)                                                                                                                                                      tGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgact                                                         <  2:478472‑M1/214‑128 (MQ=255)                                                                                                                                                             cgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGAccc                                  >  1:125033‑M1/74‑230 (MQ=255)                                                                                                                                                                  gCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCGCGGGcggcgcttcgcgggtaaacccgc                                                                                                                                                                 >  2:410617‑M1/1‑75 (MQ=255)                                                                                                                                                                  gCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCGCGGGcggcgcttcgcgggtaaacccgc                                                                                                                                                                 <  1:410620‑M1/98‑24 (MQ=255)                                                                                                                                                                            gttcAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactg                                                        <  2:13163‑M1/192‑129 (MQ=255)                                                                                                                                                                                        gactggtgcaggagggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACAAACTCTTACTACTCCTg  >  1:415166‑M1/47‑235 (MQ=255)                                                                                                                                                                                                    agggactggccgaaacacacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGaa                     >  1:962472‑M1/35‑204 (MQ=255)                                                                                                                                                                                                     gggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAAt                                                  <  1:679281‑M1/141‑1 (MQ=255)                                                                                                                                                                                                     gggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAAt                                                  >  2:679278‑M1/34‑174 (MQ=255)                                                                                                                                                                                                     gggactggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACAAACTCTtact         <  2:415163‑M1/182‑1 (MQ=255)                                                                                                                                                                                                           ggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAACCACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCaa                                                                              <  2:51421‑M1/113‑1 (MQ=255)                                                                                                                                                                                                           ggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCACAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACAAACTCTTACTACTc     <  2:401835‑M1/186‑1 (MQ=255)                                                                                                                                                                                                           ggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACAAActc              <  2:377346‑M1/177‑1 (MQ=255)                                                                                                                                                                                                           ggccgaaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACAAActc              >  1:377349‑M1/28‑204 (MQ=255)                                                                                                                                                                                                                aaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATcc                                                >  2:570714‑M1/23‑165 (MQ=255)                                                                                                                                                                                                                aaacaaacgtaggagcgggtttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATcc                                                <  1:570717‑M1/143‑1 (MQ=255)                                                                                                                                                                                                                                         cgcgcggcgcttcgcgggtaaacccgctcctacgtttgtt                                                                                                                                                    <  2:300944‑M1/40‑37 (MQ=255)                                                                                                                                                                                                                                         cgcgcggcgcttcgcgggtaaacccgctcctacgtttgtt                                                                                                                                                    >  1:300947‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                       GCTTGAGAAAAGCTGACCTTGGCGTCAACTTTACAGCAATTGGGTGGGTAGAGGCAAAGTCAAGCTGACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACAAACTCTTACTACTCCTG  >  AE015451/4807944‑4808361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.