| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 4945197 | 47 (0.820) | 16 (0.290) | 15/328 | NT | 25.0% | intergenic (+557/+241) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| ? | AE015451 | 4945389 = | 51 (0.920) | intergenic (+749/+49) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein | |||||
ACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGC > AE015451/4944987‑4945429 | acacCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAgc > 1:1027227/1‑235 (MQ=255) gTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCgcgggcggcgctcgatctcacaggcaacgcaa < 1:239439‑M1/235‑33 (MQ=255) ccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTg < 1:840006/236‑1 (MQ=255) gCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCaa > 1:981408/1‑216 (MQ=255) ccGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCccgcgcggcgctcgatctcacaggcaacgcaaacctatcg < 2:411588‑M1/233‑41 (MQ=255) aGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCG > 2:807061‑M1/1‑200 (MQ=255) cccGGACAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAACCTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCccgcgcggcgctcgatctcacaggcaacgcaaacctatcgcc < 1:186932‑M1/230‑43 (MQ=255) ggCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCAggtccggcgggatcggcaggtcgtccttcagtggct < 2:668292‑M1/233‑37 (MQ=255) ccAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACAttt < 1:412041/221‑1 (MQ=255) aGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTc < 2:116906/224‑1 (MQ=255) aGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTAt > 1:981932/1‑235 (MQ=255) tgttgttGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCGCTTGATGCAAAACTTTGACGCCCAGTGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAgctcgc < 1:26824/207‑1 (MQ=255) gTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCgcgggcggcgctcgatctcacaggcatcgcaaacc > 1:125191‑M1/1‑167 (MQ=255) ttAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCGCCGCCAGGTACAGCCCCGCCgggatctcctgctcaagttcggtggagtaatagatcgcccgcgccagcgccggcgattc < 1:747312‑M1/234‑60 (MQ=255) tAACTGTGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAgc < 2:499523/182‑1 (MQ=255) gaacTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCAggtccggcgggatcggcaggtcgtccttcagtggctctgggcgcttgcccttgccggcgcggtatt < 1:830601‑M1/235‑67 (MQ=255) cgaGTGCGATCCACCGCGAGTCCCCTTGATGCAAAACTGTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCgcgggcggcgctc < 2:345821‑M1/166‑14 (MQ=255) aGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTc < 2:1022178/195‑1 (MQ=255) gATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCgggatctcctgctcaagttcggtggagtaatagatcgcccgcgccagcgccggcgattcgaggatctggatgttgtg > 2:800798‑M1/1‑148 (MQ=255) gATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTac > 1:55545/1‑236 (MQ=255) aTCCACCGCGAGTCCTCTTGATGCTAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCGTTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCgcgggcggcgctcgatctcac < 2:829829‑M1/167‑22 (MQ=255) aTCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTaca < 1:258303/236‑1 (MQ=255) ccGCGAGTCCTCTGGATGCAAAACTGTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCaa < 1:48066/163‑1 (MQ=255) aGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATAtt < 1:940693/236‑1 (MQ=255) cttttgatGCAAACCTTTGACGCCAAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCGGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCgcgggcggcgc < 1:270418‑M1/140‑12 (MQ=255) ctctTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTcgc < 2:981929/217‑1 (MQ=255) ctctTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTgcg < 1:957011/235‑1 (MQ=255) tctTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCAggtccggcgggatcggcaggtcgtccttcagtggct < 2:1090190‑M1/179‑37 (MQ=255) tctTGATGCAAAACTTGGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTGTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGAcc < 2:119343/208‑1 (MQ=255) gCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATAtt < 1:717609/224‑1 (MQ=255) aaCTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCAggtccggcgggatcggcaggtcgtccttcagtggctctgggcgcttgcccttgccggcgcggtattggcgaatctggaacacatacgccagcacctgcgccacc < 1:974029‑M1/236‑105 (MQ=255) cTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGc > 1:981457/1‑236 (MQ=255) tGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTaca < 2:55543/205‑1 (MQ=255) gACGCGCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCgcgggcggcgctcgatctcacaggcaacgcaaacctatcgccgaacagatcaactgtcgcggcgcaggtccggcgggatcggcaggtcgtccttcagtggctctgggcgcttgcccttgccg < 1:1053806‑M1/236‑123 (MQ=255) ccAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTcgcgc < 2:845305/235‑1 (MQ=255) cAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTcgcgcgc < 1:999132/236‑1 (MQ=255) aGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCCCGCGCGGCGCATcgcg < 1:839583/124‑1 (MQ=255) gggggCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTgcgc < 2:283801/210‑1 (MQ=255) ggggCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGa < 1:1034508/180‑1 (MQ=255) gggCGCCTGCGGCTTGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCg < 1:79140/236‑1 (MQ=255) ggCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCgcgggcggcgctcgatctcacaggcaacgcaaacctatcgccgaacagatcaactgtcgcggcgcaggtccggcgggatcggcaggtcgtccttcagtggctctgggcgcttgcccttgccggc < 1:893858‑M1/227‑125 (MQ=255) cgcCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCAggtccggcgggatcggcaggtcgtccttcagtggctctgggcgcttgcccttgccg < 2:536992‑M1/169‑57 (MQ=255) cgcCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCg < 2:1027224/233‑1 (MQ=255) gcCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCAggtccggcgggatcggcaggtcgtccttcagtggctctgggcgcttgcccttgccggcgcggtattggcgaatctggaacacatacgccagcacctgc < 2:462906‑M1/210‑99 (MQ=255) gtGCGGCTGGCATGGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGTCGTGAGGTTTTTGTCGCCTGTGAGATCGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTc < 1:472411/180‑1 (MQ=255) cTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCgcgggcggcgctcgatctcacaggcaacgcaaacctatcgccgaacagatcaactgtcgcgg > 2:508594‑M1/1‑98 (MQ=255) tGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCACCGCCAGCAAg > 2:23727/1‑120 (MQ=255) gCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCTCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTcgc < 2:204497/178‑1 (MQ=255) cTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTgcg < 2:400643/186‑1 (MQ=255) aGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCAggtccggcgggatcggcaggtcgtccttcagtggctctgggcgcttgcccttgccggcgcggtattggcgaatctggaacacatacgccagcacctgcgccaccgccaggtacagccccgccgggatctcctgctcaag < 1:441876‑M1/232‑140 (MQ=255) cAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCgggatctcctgctcaagttcggtggagtaatagatcgcccgcgccagcgccggcgattcgaggatctggatgttgtgctccacgccaatttcacgaatcttcaacgccatgaaatcgctacccttggccagcagcaacggcgccgcaccgcctttct > 1:161292‑M1/1‑72 (MQ=255) tttGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTcgcgcgtaaat < 1:158805/199‑6 (MQ=255) gtgATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACaa < 1:1070394/223‑1 (MQ=255) aTCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCt < 1:538452/235‑1 (MQ=255) tCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCgcgggcggcgctcgatctcacaggcaacgcaaacctatcgccgaacagatcaactgtcgcggcgcaggtccggcgggatcggcaggtc > 2:953154‑M1/1‑60 (MQ=255) ctgTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTcgcgc < 2:981454/182‑1 (MQ=255) tgtgAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCg < 2:1041132/187‑1 (MQ=255) gAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATAtt > 2:104349/1‑152 (MQ=255) gAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATAtt < 1:104351/152‑1 (MQ=255) tCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTgcg < 2:263913/152‑1 (MQ=255) gggTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCgggatctcctgctcaagttcggtggagtaatagatcgcccgcgccagcgccggcgattcgaggatctggatgttgtgctccacgccaatttcacgaatcttcaacgccatgaaatcgctacccttggccagcagcaacggcgccgcaccgcctttctccgggtcgtattgcaaagccaccgcataatg < 1:800801‑M1/235‑189 (MQ=255) gtgtCCGCCGTGAGCTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCaa < 1:882752/66‑1 (MQ=255) tgtTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAg > 2:903543/1‑159 (MQ=255) ttCGCCGTGAGGGTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTcgcgcgc < 2:6947/169‑1 (MQ=255) ccGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGa < 1:434053/191‑1 (MQ=255) tGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCccgcgcggcgctcgatctcacaggcaacgcaaacctatcgccgaacagatcaactgtcgcggcgcaggtccggcgggatcggcaggtcgtccttcagtggctctgggcgcttgcccttgccggcgcggtattggcgaatctggaaca < 2:629807‑M1/181‑148 (MQ=255) aGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGatat < 2:621802/131‑1 (MQ=255) ggTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTg > 2:919947/1‑70 (MQ=255) ggTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTg < 1:919950/70‑1 (MQ=255) ggTTTTTGTCGCCTGTAAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGa < 1:789768/185‑1 (MQ=255) gTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCgcgggcggcgctcgatctcacaggcaacgcaaacctatcgccgaacagatcaactgtcgcggcgcaggtccggcgggatcggcaggtcgtccttcagtggctctgggcgcttgcccttgccggcgcggtattggcgaatctggaacacatacgccagcacctgcgccacc < 2:865555‑M1/200‑171 (MQ=255) gTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCgcgggcggcgctcgatctcacaggcaacgcaaacctatcgccgaacagatcaactgtcgcggcgcaggtccggcgggatcagcaggtcgtccttcagtggctctgggcgcttgcccttgccggcgcggtattggcgaatctggaacacatacgccagcacctgc < 1:953157‑M1/194‑165 (MQ=255) tttGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCgcgggcggcgctcgatctcacaggcaacgcaaacctatcgccgaacagatcaactgtcgcggcgcaggtccggcgggatcggcaggtcgtccttcagtggctctgggcgcttgcccttgccggcgcggtattggcgaatctggaacacatacgccagcacctgcgccaccgccaggtacagccccgccgggatctcctgctcaagttcg < 1:940760‑M1/236‑210 (MQ=255) gtgTCGCGTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCgcgggcggcgctcgatcgcacaggcaacgcaaacctatcgccgaacagatcaactgtcgcggcgcaggtccggcgggatcggcaggtcgtccttcagtggctctgggcgcttgcccttgccggcgcggtattggcgaatctggaacacatacgccagcacctgcgccacc < 2:125189‑M1/195‑171 (MQ=255) gtgAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGGTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATAtt < 2:81865/117‑1 (MQ=255) g‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTg > 2:602898/1‑106 (MQ=255) g‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTg < 1:602901/106‑1 (MQ=255) cgccgggatctcctgctcaagttcggtggagtaatagatcgcccgcgccagcgccggcgattcgaggatctggatgttgtgctccacgccaatttcacgaatcttcaacgccatgaaatcgctacccttggccagcagcaacggcgccgcaccgcctttctccgggtcgtattgcaaagccaccgcataatgcgtcgggttggtgatgatcacatctgcatccggtaccgccgcc > 1:759956‑M1/1‑4 (MQ=255) gcccgcGCGGCGCAggtccggcgggatcggcaggtcgtccttcagtggctctgggcgcttgcccttgccggcgcggtattggcgaatctggaacacatacgccagcacctgcgccaccgccaggtacagccccgccgggatctcctgctcaagttcggtgg > 2:11343‑M1/1‑14 (MQ=255) | ACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGC > AE015451/4944987‑4945429 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |