New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4945198	49 (0.850)	4 (0.070)	4/332	NT	8.0%	intergenic (+558/+240)	PP_5673/flhB	putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein
	?	AE015451	4945577 =	45 (0.800)					coding (1004/1143 nt)	flhB	flagellin export apparatus, substrate specificity protein

ACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGC  >  AE015451/4944987‑4945429                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                        acacCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAgc                                                                                                                                                                                                                  >  1:1027227/1‑235 (MQ=255)               ccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTg                                                                                                                                                                                                   <  1:840006/236‑1 (MQ=255)                  gCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCaa                                                                                                                                                                                                                    >  1:981408/1‑216 (MQ=255)                      aGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCG                                                                                                                                                                                                                                >  2:807061‑M1/1‑200 (MQ=255)                           ggCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCAggtccggcgggatcggcaggtcgtccttcagtggct                                                                                                                                                                                          <  2:668292‑M1/233‑37 (MQ=255)                             ccAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACAttt                                                                                                                                                                                                    <  1:412041/221‑1 (MQ=255)                               aGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTc                                                                                                                                                                                               <  2:116906/224‑1 (MQ=255)                               aGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTAt                                                                                                                                                                                    >  1:981932/1‑235 (MQ=255)                                tgttgttGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCGCTTGATGCAAAACTTTGACGCCCAGTGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAgctcgc                                                                                                                                                                                                              <  1:26824/207‑1 (MQ=255)                                                     ttAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCGCCGCCAGGTACAGCCCCGCCgggatctcctgctcaagttcggtggagtaatagatcgcccgcgccagcgccggcgattc                                                                                                                                                                              <  1:747312‑M1/234‑60 (MQ=255)                                                      tAACTGTGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAgc                                                                                                                                                                                                                  <  2:499523/182‑1 (MQ=255)                                                      gaacTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCAggtccggcgggatcggcaggtcgtccttcagtggctctgggcgcttgcccttgccggcgcggtatt                                                                                                                                                            <  1:830601‑M1/235‑67 (MQ=255)                                                            aGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTc                                                                                                                                                                                               <  2:1022178/195‑1 (MQ=255)                                                                 gATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCgggatctcctgctcaagttcggtggagtaatagatcgcccgcgccagcgccggcgattcgaggatctggatgttgtg                                                                                                                                                            >  2:800798‑M1/1‑148 (MQ=255)                                                                 gATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTac                                                                                                                                                 >  1:55545/1‑236 (MQ=255)                                                                  aTCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTaca                                                                                                                                                <  1:258303/236‑1 (MQ=255)                                                                       ccGCGAGTCCTCTGGATGCAAAACTGTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCaa                                                                                                                                                                                                                    <  1:48066/163‑1 (MQ=255)                                                                            aGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATAtt                                                                                                                                      <  1:940693/236‑1 (MQ=255)                                                                                ctctTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTcgc                                                                                                                                                     <  2:981929/217‑1 (MQ=255)                                                                                ctctTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTgcg                                                                                                                                   <  1:957011/235‑1 (MQ=255)                                                                                 tctTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCAggtccggcgggatcggcaggtcgtccttcagtggct                                                                                                                                                                                          <  2:1090190‑M1/179‑37 (MQ=255)                                                                                 tctTGATGCAAAACTTGGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTGTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGAcc                                                                                                                                                             <  2:119343/208‑1 (MQ=255)                                                                                        gCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATAtt                                                                                                                                      <  1:717609/224‑1 (MQ=255)                                                                                            aaCTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCAggtccggcgggatcggcaggtcgtccttcagtggctctgggcgcttgcccttgccggcgcggtattggcgaatctggaacacatacgccagcacctgcgccacc                                                                                                                      <  1:974029‑M1/236‑105 (MQ=255)                                                                                              cTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGc                                                                                                                    >  1:981457/1‑236 (MQ=255)                                                                                                 tGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTaca                                                                                                                                                <  2:55543/205‑1 (MQ=255)                                                                                                       ccAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTcgcgc                                                                                                            <  2:845305/235‑1 (MQ=255)                                                                                                        cAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTcgcgcgc                                                                                                          <  1:999132/236‑1 (MQ=255)                                                                                                         aGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCCCGCGCGGCGCATcgcg                                                                                                                                                                                                                         <  1:839583/124‑1 (MQ=255)                                                                                                          gggggCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTgcgc                                                                                                                                  <  2:283801/210‑1 (MQ=255)                                                                                                           ggggCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGa                                                                                                                                                               <  1:1034508/180‑1 (MQ=255)                                                                                                            gggCGCCTGCGGCTTGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCg                                                                                                      <  1:79140/236‑1 (MQ=255)                                                                                                               cgcCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCAggtccggcgggatcggcaggtcgtccttcagtggctctgggcgcttgcccttgccg                                                                                                                                                                      <  2:536992‑M1/169‑57 (MQ=255)                                                                                                               cgcCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCg                                                                                                      <  2:1027224/233‑1 (MQ=255)                                                                                                                gcCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCAggtccggcgggatcggcaggtcgtccttcagtggctctgggcgcttgcccttgccggcgcggtattggcgaatctggaacacatacgccagcacctgc                                                                                                                            <  2:462906‑M1/210‑99 (MQ=255)                                                                                                                  gtGCGGCTGGCATGGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGTCGTGAGGTTTTTGTCGCCTGTGAGATCGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTc                                                                                                                                                       <  1:472411/180‑1 (MQ=255)                                                                                                                   tGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCACCGCCAGCAAg                                                                                                                                                                                                                   >  2:23727/1‑120 (MQ=255)                                                                                                                       gCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCTCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTcgc                                                                                                                                                     <  2:204497/178‑1 (MQ=255)                                                                                                                                 cTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTgcg                                                                                                                                   <  2:400643/186‑1 (MQ=255)                                                                                                                                   aGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCAggtccggcgggatcggcaggtcgtccttcagtggctctgggcgcttgcccttgccggcgcggtattggcgaatctggaacacatacgccagcacctgcgccaccgccaggtacagccccgccgggatctcctgctcaag                                                                                   <  1:441876‑M1/232‑140 (MQ=255)                                                                                                                                             cAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCgggatctcctgctcaagttcggtggagtaatagatcgcccgcgccagcgccggcgattcgaggatctggatgttgtgctccacgccaatttcacgaatcttcaacgccatgaaatcgctacccttggccagcagcaacggcgccgcaccgcctttct                                                                            >  1:161292‑M1/1‑72 (MQ=255)                                                                                                                                                 tttGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTcgcgcgtaaat                                                                                                      <  1:158805/199‑6 (MQ=255)                                                                                                                                                    gtgATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACaa                                                                           <  1:1070394/223‑1 (MQ=255)                                                                                                                                                       aTCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCt                                                            <  1:538452/235‑1 (MQ=255)                                                                                                                                                            ctgTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTcgcgc                                                                                                            <  2:981454/182‑1 (MQ=255)                                                                                                                                                             tgtgAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCg                                                                                                      <  2:1041132/187‑1 (MQ=255)                                                                                                                                                                gAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATAtt                                                                                                                                      >  2:104349/1‑152 (MQ=255)                                                                                                                                                                gAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATAtt                                                                                                                                      <  1:104351/152‑1 (MQ=255)                                                                                                                                                                   tCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTgcg                                                                                                                                   <  2:263913/152‑1 (MQ=255)                                                                                                                                                                      gggTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCgggatctcctgctcaagttcggtggagtaatagatcgcccgcgccagcgccggcgattcgaggatctggatgttgtgctccacgccaatttcacgaatcttcaacgccatgaaatcgctacccttggccagcagcaacggcgccgcaccgcctttctccgggtcgtattgcaaagccaccgcataatg                                             <  1:800801‑M1/235‑189 (MQ=255)                                                                                                                                                                        gtgtCCGCCGTGAGCTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCaa                                                                                                                                                                                                                    <  1:882752/66‑1 (MQ=255)                                                                                                                                                                         tgtTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAg                                                                                                                      >  2:903543/1‑159 (MQ=255)                                                                                                                                                                           ttCGCCGTGAGGGTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTcgcgcgc                                                                                                          <  2:6947/169‑1 (MQ=255)                                                                                                                                                                               ccGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGa                                                                                <  1:434053/191‑1 (MQ=255)                                                                                                                                                                                    aGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGatat                                                                                                                                       <  2:621802/131‑1 (MQ=255)                                                                                                                                                                                     ggTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTg                                                                                                                                                                                                   >  2:919947/1‑70 (MQ=255)                                                                                                                                                                                     ggTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTg                                                                                                                                                                                                   <  1:919950/70‑1 (MQ=255)                                                                                                                                                                                     ggTTTTTGTCGCCTGTAAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGa                                                                                <  1:789768/185‑1 (MQ=255)                                                                                                                                                                                                   gtgAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGGTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATAtt                                                                                                                                      <  2:81865/117‑1 (MQ=255)                                                                                                                                                                                                               g‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTg                                                                                                                                     <  1:602901/106‑1 (MQ=255)                                                                                                                                                                                                               g‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTg                                                                                                                                     >  2:602898/1‑106 (MQ=255)                                                                                                                                                                                                                                cgccgggatctcctgctcaagttcggtggagtaatagatcgcccgcgccagcgccggcgattcgaggatctggatgttgtgctccacgccaatttcacgaatcttcaacgccatgaaatcgctacccttggccagcagcaacggcgccgcaccgcctttctccgggtcgtattgcaaagccaccgcataatgcgtcgggttggtgatgatcacatctgcatccggtaccgccgcc  >  1:759956‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                 gcccgcGCGGCGCAggtccggcgggatcggcaggtcgtccttcagtggctctgggcgcttgcccttgccggcgcggtattggcgaatctggaacacatacgccagcacctgcgccaccgccaggtacagccccgccgggatctcctgctcaagttcggtgg                                                                           >  2:11343‑M1/1‑14 (MQ=255)                                                                                                                                                                                                                                   cgggatctcctgctcaagttcggtggagtaatagatcgcccgcgccagcgccggcgattcgaggatctggatgttgtgctccacgccaatttcacgaatcttcaacgccatgaaatcgctacccttggccagcagcaacggcgccgcaccgcctttctccgggtcgtattgcaaagccaccgcataatgcgtcgggttggtgat                              >  2:891834‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                        ACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTGTTCGCCGTGAGGTTTTTGTCGCCTGTGAGATCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGCCCGCGCGGCGCATCGCGAGCAAGCTCGCTCCTACATTTGTTTCGGGCCAGTTATTCCTGCGGGATTTACGCGCGACCGCCTTCGCGTACACCTCGATATTGCGCCGTACAAACAAGGCGGTCGCGCGCGCCGGGCACAGGAGGGACTGGCCCGAAACAAATGTAGGAGCGAGCTTGCTCGCGATGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCAACGCAAACCTATCGC  >  AE015451/4944987‑4945429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.