Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	1421685	1422106	422	18 [17]	[16] 18	PP_1246	conserved exported protein of unknown function

CAGCCGTAGCCGCAGAGCCAGCCCCGGCCCCCGAAGCTCCGGCAGCAGCCCCTGTTGTGCCGCCCGCTCCGGCACCTGCCACAGCAGTCGCCGCAGCCCCCACTTCGGACTTCGGTCGCTCGGTGGTCCTGGAAAACCGCAACCTGATGCAGGTAACGGACGGCACCGGCTGCAAATGGGTACTCAGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCGGCCATGCCGTGCCCGGCGTCCGGCTTTGGTGAAGGCAGCTTCGACAAAATCAGCTGGAAGGCTGTGGGTACCTACCGGGGTGATAACTGGACCCGCGTTTATGCTCACCCGAGTGGTTTGATCTTCAACAAGAACCTTGAGCCTGCGGTAAAGGACAAGGCCGTTTCTTATCTTACGCCGCAAGC  >  AE015451/1421922‑1422342                                                                                                                                                                                          |                                                                                                                                                                                                                                            cAGCCGTAGCCGCAGAGCCAGCCCCGGCCCCCGAAGCTCCGGCAGCAGCCCCTGTTGTGCCGCCCGCTCCGGCACCTGCCACAGCAGTCGCCGCAGCCCCCACTTCGGACTTCGGTCGCTCGGTGGTCCTGGAAAACCGCAACCTGATGCAGGTAACGGACGGCACCGGCTGCAAATGGGTACTCAGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCg                                                                                                                                                                                           >  1:644612/1‑236 (MQ=255)                agccagccCCGGCCCCCGAAGCTCCGGCAGCAGCCCCTGTTGTGCCGCCCGCTCCGGCACCTGCCACAGCAGTCGCCGCAGCCCCCACTTCGGACTTCGGTCGCTCGGTGGTCCTGGAAAACCGCAACCTGATGCAGGTAACGGACGGCACCGGCTGCAAATGGGCACTCAGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCGGCCAt                                                                                                                                                                                      >  1:988018/1‑226 (MQ=255)                                                                      cGGCACCTGCCACAGCAGTCGCCGCAGCCCCCACTTCGGACTTCGGTCGCTCGGTGGTCCTGGAAAACCGCAACCTGATGCAGGTAACGGACGGCACCGGCTGCAAATGGGTACTCAGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCGGCCATGCCGTGCCCGGCGTCCGGCTTTGGTGAAGGCAGCTTCGACac                                                                                                                                            >  1:364935/1‑213 (MQ=255)                                                                                 acaGCAGTCGCCGCAGCCCCCACTTCGGACTTCGGTCGCTCGGTGGTCCTGGAAAACCGCAACCTGATGCAGGTAACGGACGGCACCGGCTGCAAATGGGTACTCAGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCGGCCATGCCGTGCCCGGCGTCCGGCTTTGGTg                                                                                                                                                            >  2:482296/1‑187 (MQ=255)                                                                                 acaGCAGTCGCCGCAGCCCCCACTTCGGACTTCGGTCGCTCGGTGGTCCTGGAAAACCGCAACCTGATGCAGGTAACGGACGGCACCGGCTGCAAATGGGTACTCAGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCGGCCATGCCGTGCCCGGCGTCCGGCTTTGGTGAAGGCAGCTTCGACa                                                                                                                                             >  1:966337/1‑202 (MQ=255)                                                                                            cgcAGCCCCCACTTCGGACTTCGGTCGCTCGGTGGTCCTGGAAAACCGCAACCTGATGCAGGTAACGGACGGCACCGGCTGCAAATGGGTACTCAGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCGGCCATGCCGt                                                                                                                                                                                 <  2:56031/155‑1 (MQ=255)                                                                                            cgcAGCCCCCACTTCGGACTTCGGTCGCTCGGTGGTCCTGGAAAACCGCAACCTGATGCAGGTAACGGACGGCACCGGCTGCAAATGGGTACTCAGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCGGCCATGCCGt                                                                                                                                                                                 >  1:56033/1‑155 (MQ=255)                                                                                                     cACTTCGGACTTCGGTCGCTCGGTGGTCCTGGAAAACCGCAACCTGATGCAGGTAACGGACGGCACCGGCTGCAAATGGGTACTCAGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCGGCCATGCCATGCCCGGCGTCCGGCTTTGGTGAAGGCAGCTTCGACAAAATCAGCTGGAAGGCTGTGGGTACCTACCGGGGTGATAACTGGACCCGCGttt                                                                                       >  1:668540/1‑236 (MQ=255)                                                                                                                     cGCTCGGTGGTCCTGGAAACCCGCAACCTGATGCAGGTAACGGACGGCACCGGCTGCAAATGGGTACTCAGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCGGCCATGCCGt                                                                                                                                                                                 >  2:609245/1‑130 (MQ=255)                                                                                                                     cGCTCGGTGGTCCTGGAAAACCGCAACCTGATGCAGGTAACGGACGGCACCGGCTGCAAATGGGTACTCAGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCGGCCATGCCGt                                                                                                                                                                                 <  1:609248/130‑1 (MQ=255)                                                                                                                       cTCGGTGGTCCTGGAAAACCGCAACCTGATGCAGGTAACGGACGGCACCGGCTGCAAATGGGTACTCAGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCGGCCATGCCGTGCCCGGCGTCCGGCTTTGGTGAAGGCAGCTTCGACAAAATCAGCTGGAAGGCTGTGGGTACCTACCGGGGTGATAACTGGACCCGCGTTTATGCTCACCCGAGTGGtt                                                                     >  1:23889/1‑236 (MQ=255)                                                                                                                                            cAACCTGATGCAGGTAACGGACGGCACCGGCTGCAAATGGGTACTCAGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCGGCCATGCCGTGCCCGGCGTCCGGCTTTGGTGAAGGCAGCTTCGACAAAATCAGCTGGAAGGCTGTGGGTACCTACCGGGGTGATAACTGGACCCGCGTTTATGCTCACCCGAGTGGTTTGATCTTCAACAAGAACCTTg                                                >  1:801912/1‑236 (MQ=255)                                                                                                                                                                acggCACCGGCTGCAAATGGGTACTCAGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCGGCCATGCCGTGCCCGGCGTCCGGCTTTGGTGAAGGCAGCTTCGACAAAATCAGCTGGAAGGCTGTGGGTACCTACCGGGGTGATAACTGGACCCGCGTTTATGCTCACCCGAGTGGTTTGATCTTCAACAAGAACCTTGAGCCTGCGGTAAAg                                  >  1:581378/1‑230 (MQ=255)                                                                                                                                                                acggCACCGGCTGCAAATGGGTACTCAGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCGGCCATGCCGTGCCCGGCGTCCGGCTTTGGTGAAGGCAGCTTCGACAAAATCAGCTGGAAGGCTGTGGGTACCTACCGGGGTGATAACTGGACCCGCGTTTATGCTCACCCGAGTGGTTTGATCTTCAACAAGAACCTTGAGCCTGCGGTAAAg                                  <  2:581375/230‑1 (MQ=255)                                                                                                                                                                       cGGCTGCAAATGGGTACTCAGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCGGCCATGCCGTGCCCGGCGTCCGGCTTTGGTGAAGGCAGCTTCGACAAAATCAGCTGGAAGGCTGTGGGTACCTACCGGGGTGATAACTGGACCCGCGTTTATGCTCACCCGa                                                                           >  2:506716/1‑182 (MQ=255)                                                                                                                                                                       cGGCTGCAAATGGGTACTCAGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCGGCCATGCCGTGCCCGGCGTCCGGCTTTGGTGAAGGCAGCTTCGACAAAATCAGCTGGAAGGCTGTGGGTACCTACCGGGGTGATAACTGGACCCGCGTTTATGCTCACCCGAGTGGTTTGATCTTCAACAAGAACCTTGAGCCTGCGGTAAAGGACAAGGCCGtt                      >  1:905013/1‑235 (MQ=255)                                                                                                                                                                                          aGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCGGCCATGCCGTGCCCGGCGTCCGGCTTTGGTGAAGGCAGCTTCGACAAAATCAGCTGGAAGGCTGTGGGTACCTACCGGGGTGATAACTGGACCCGCGTTTATGCTCACCCGAGTGGTTTGATCTTCAACAAGAACCTTGAGCCTGCGGTAAAGGACAAGGCCGTTTCTTATCTTACGCCGCAAg   >  1:384291/1‑235 (MQ=255)                                                                                                                                                                                          aGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCGGCCATGCCGTGCCCGGCGTCCGGCTTTGGTGAAGGCAGCTTCGACAAAATCAGCTGGAAGGCTGTGGGTACCTACCGGGGTGATAACTGGACCCGCGTTTATGCTCACCCGAGTGGTTTGATCTTCAACAAGAACCTTGAGCCTGCGGTAAAGGACAAGGCCGTTTCTTATCTTACGCCGCAAGc  >  1:360867/1‑236 (MQ=255)                                                                                                                                                                                          |                                                                                                                                                                                                                                            CAGCCGTAGCCGCAGAGCCAGCCCCGGCCCCCGAAGCTCCGGCAGCAGCCCCTGTTGTGCCGCCCGCTCCGGCACCTGCCACAGCAGTCGCCGCAGCCCCCACTTCGGACTTCGGTCGCTCGGTGGTCCTGGAAAACCGCAACCTGATGCAGGTAACGGACGGCACCGGCTGCAAATGGGTACTCAGTACCTCGATCATCGGCGATGGCGACACCCTGTCGTTCGGCACCACCCCGGCCATGCCGTGCCCGGCGTCCGGCTTTGGTGAAGGCAGCTTCGACAAAATCAGCTGGAAGGCTGTGGGTACCTACCGGGGTGATAACTGGACCCGCGTTTATGCTCACCCGAGTGGTTTGATCTTCAACAAGAACCTTGAGCCTGCGGTAAAGGACAAGGCCGTTTCTTATCTTACGCCGCAAGC  >  AE015451/1421922‑1422342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑