Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	5816935	5817185	251	18 [17]	[17] 18	[pilT]	[pilT]

CGCCAACCGCCCCTCCCGAACCAGGTTACGCACCGCCGGCGTCGCCACCAGCACTTCCCGCGCCGCCACCCGCCCACCCCCTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTG  >  AE015451/5817045‑5817419                                                                                                                                              |                                                                                                                                                                                                                                          cgcCAACCGCCCCTCCCGAACCAGGTTACGCACCGCCGGCGTCGCCACCAGCACTTCCCGCGCCGCCACCCGCCCACCCCCTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGcc                                                                                                                                             >  1:919977/1‑236 (MQ=255)                                                       ttCCCGCGCCGCCACCCGCTCACCCCCTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCTCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCAAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGttcg                                                                                                                                      >  2:1024454/1‑187 (MQ=255)                                                                                     gcgcCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGgcg                                                           >  2:581798/1‑234 (MQ=255)                                                                                           gACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGcc                                                                                                                                                                               >  2:470489/1‑112 (MQ=255)                                                                                           gACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGcc                                                                                                                                                                               <  1:470492/112‑1 (MQ=255)                                                                                           gACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAgg                                                                                                    >  1:25394/1‑187 (MQ=255)                                                                                           gACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTcc                                                                >  1:734786/1‑223 (MQ=255)                                                                                               aGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAAc                                                                                           >  1:681461/1‑192 (MQ=255)                                                                                                         cgACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCCAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAgg                                                                                                    >  2:444581/1‑173 (MQ=255)                                                                                                         cgACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCTGCGCGCAGGGCCAGGCGAATGGTTTc                                                                                                        >  1:230116/1‑169 (MQ=255)                                                                                                         cgACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACt                                                  >  2:1002130/1‑223 (MQ=255)                                                                                                         cgACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGa                                     >  1:380110/1‑236 (MQ=255)                                                                                                              accaGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGa                                     >  1:75850/1‑231 (MQ=255)                                                                                                                caGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGTGCATGCACGGTTGCCAGCACCAGGTGCCCgg                                                                                                                                          >  1:153525/1‑128 (MQ=255)                                                                                                                  ggCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCcg                            >  1:740480/1‑236 (MQ=255)                                                                                                                         cGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTAt                     >  1:109606/1‑236 (MQ=255)                                                                                                                                            cGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCt                                       >  2:342855/1‑199 (MQ=255)                                                                                                                                              cACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCCGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGcct  >  1:325491/1‑232 (MQ=255)                                                                                                                                              |                                                                                                                                                                                                                                          CGCCAACCGCCCCTCCCGAACCAGGTTACGCACCGCCGGCGTCGCCACCAGCACTTCCCGCGCCGCCACCCGCCCACCCCCTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCCCATCTCACGCTG  >  AE015451/5817045‑5817419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑