| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AE015451 | 6,151,153 | T→C | 5.6% | V55A (GTC→GCC) | PP_5395 → | conserved protein of unknown function |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451 | 6,151,153 | 0 | T | C | 5.6% | 236.4 / 3.6 | 71 | V55A (GTC→GCC) | PP_5395 | conserved protein of unknown function |
| Reads supporting (aligned to +/- strand): ref base T (41/25); new base C (2/2); total (44/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.71e-01 | |||||||||||
GCAGGTAGCCCTTAGCCATTAGCTGTCCATCAACGCTAAGGATCAGCCGCTGACATGGAGGTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAAGATCGAAATCACTGCCCATCTCTACAACGTGGCTGACCCTCTACCTGCCGAACATTTTGGGGCCTACGACGGCTTTCATATC > AE015451/6150929‑6151388 | gCAGGTAGCCCTTAGCCATTAGCTGTCCATCAACGCTAAGGATCAGCCGCTGACATGGAGGTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTg > 1:824309/1‑236 (MQ=255) cTTAGCCATTAGCTGTCCATCAACGCGAAGGATCAGCCGCTGACATGGAGGTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGAt < 1:34875/234‑1 (MQ=255) ttAGCCATTAGCTGTCCATCAACGCTAAGGATCAGCCGCTGACATGGAGGTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAGGAAGGTGGTCTTCGTTGGTGACGGCGATgg > 1:638764/1‑235 (MQ=255) cTGTCCATCAACGCTAAGGATCAGCCGCTGACATGGAGGTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCttta > 1:361597/1‑235 (MQ=255) cTGTCCATCAACGCTAAGGATCAGCCGCTGACATGGAGGTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGCCTTCGTTGGTGACGGCGATGGGATAGCCCTTTc > 1:130513/1‑236 (MQ=255) cTGTCCATCAACGCTAAGGATCAGCCGCTGACATGGAGGTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGCCTTCGTTGGTGACGGCGATGGGATAGCCCTTTc > 1:130504/1‑236 (MQ=255) tGTCCATCAACGCTAAGGATCAGCCGCTGACATGGAGGTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCa > 1:920110/1‑236 (MQ=255) ccATCAACGCTAAGGATCAGCCGCTGACATGGAGGTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATggg < 1:293371/221‑1 (MQ=255) aTCAACGCTAAGGATCAGCCGCTGACATGGAGGTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCtg > 2:655129/1‑227 (MQ=255) aTCAACGCTAAGGATCAGCCGCTGACATGGAGGTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCt > 2:381355/1‑234 (MQ=255) tCAACGCTAAGGATCAGCCGCTGACATGGAGGTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAGGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCt < 2:638761/233‑1 (MQ=255) cTAAGGATCAGCCGCTGACATGGAGGTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCt < 2:326657/227‑1 (MQ=255) aGGATCAGCCGCTGACATGGAGGTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCaa > 1:917228/1‑235 (MQ=255) aGCCGCTGACATGGAGGTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCag < 1:330357/236‑1 (MQ=255) gCCGCTGACATGGAGGTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGTCCGAGTACGTCGCAAGGGTCTTCGAACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCag < 1:391370/236‑1 (MQ=255) cGCTGACATGGAGGTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCaggag > 1:562072/1‑236 (MQ=255) cATGGAGGTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCa > 2:363311/1‑214 (MQ=255) gTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGGCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACg > 1:167325/1‑236 (MQ=255) gTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCACTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGcacaa > 1:80193/1‑232 (MQ=255) tCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCGAGGAGGTAATCAGCTACGGGCCaaa > 1:1065575/1‑225 (MQ=255) tCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCg > 2:742136/1‑229 (MQ=255) aaGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACg > 2:818656/1‑232 (MQ=255) tGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGCCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATc < 2:130502/223‑1 (MQ=255) gATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCgc > 1:1031278/1‑152 (MQ=255) gATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACggg > 1:185457/1‑208 (MQ=255) gATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAACTCGATCACGCTCCTGGATTTc > 1:461241/1‑235 (MQ=255) gATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCg > 1:856693/1‑236 (MQ=255) aaTAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATg < 1:16213/235‑1 (MQ=255) aTAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGCGGTa > 2:311548/1‑191 (MQ=255) aTAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGa > 1:856090/1‑235 (MQ=255) tAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTg < 1:951085/137‑1 (MQ=255) aCGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAGGCCCag > 2:503125/1‑173 (MQ=255) aCGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAAc > 1:624668/1‑236 (MQ=255) cGACCCGCCCCCTTGCGCGAGTTTGACCATATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGTGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAg < 2:51394/154‑1 (MQ=255) cGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATg < 1:926045/208‑1 (MQ=255) cGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGCTGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGCGGTAATCAGCTACGGGcc > 2:18367/1‑174 (MQ=255) ccTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATg > 2:407229/1‑198 (MQ=255) ccaGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑CCGGGAAGAAGGTGGTCTTCGTTGGTGACg < 2:657838/99‑1 (MQ=255) cGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTg > 2:399650/1‑119 (MQ=255) cAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAAGATCGa < 1:35949/236‑1 (MQ=255) tCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAAGATCGaaa < 1:772013/234‑1 (MQ=255) cTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAAGATCGAAATCa < 1:283748/236‑1 (MQ=255) tACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGACGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAGTCGATCACgacc > 2:294677/1‑159 (MQ=255) aCATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAAGATCGAAATCACt < 1:440958/236‑1 (MQ=255) cATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAAGATCGAAATCACt < 1:623933/235‑1 (MQ=255) acgAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCTCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGCGCCAAAATCGATCACGCTCCTGGATTTCGATg < 2:728387/170‑1 (MQ=255) gAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAgcgc < 2:407534/215‑1 (MQ=255) gAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAAGATCGAAATCACt < 2:920107/232‑1 (MQ=255) ggTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAAGATCGAAATCACTGcc < 2:167323/232‑1 (MQ=255) tCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGCTTTCGATGCGCGAATCGTcca > 2:61921/1‑176 (MQ=255) tCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATc > 2:1074497/1‑173 (MQ=255) tCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTAc > 2:699155/1‑186 (MQ=255) tCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTAAGTACGGCGATTCGGTGAAAAACTAgca > 1:72942/1‑208 (MQ=255) tCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCCCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATGCGGTGCAAAACTAGCGCCCAAGATCGAAATCACTGCCCAt > 2:101426/1‑233 (MQ=255) cgcgGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTc > 2:1016490/1‑160 (MQ=255) cgGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAAGATCGAAATCACTGCCCATCTCTAc < 1:752138/236‑1 (MQ=255) gATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGa > 2:412104/1‑139 (MQ=255) gATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAAGATCGAAATCACTGCCCATCTCTAc < 2:856690/234‑1 (MQ=255) gATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAAGATCGAAATCACTGCCCATCTCTACa > 1:934302/1‑235 (MQ=255) gATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAAGATCGAAATCACTGCCCATCTCTACa > 1:323140/1‑235 (MQ=255) aTCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGCCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATc < 2:130511/132‑1 (MQ=255) aGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACg < 2:657047/131‑1 (MQ=255) aGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAAACAGCTACGGGCCAAAATCGATCACg > 1:657050/1‑131 (MQ=255) gAGTACGTCGCAAGGGACTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTGTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGa > 1:855527/1‑140 (MQ=255) cGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAAGATCGAAATCACt < 2:1053163/199‑1 (MQ=255) gCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTa > 2:733032/1‑174 (MQ=255) gTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAAGATCGAAATCACTGCCCATCTCTACAACGTGGCTGACCCTCTACCTGCCGAACATTTTgg > 1:307203/1‑236 (MQ=255) cG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAAGATCGAAATCACTGCCCATCTCTACAACGTGGCTGACCCTCTACCTGcc > 2:539733/1‑220 (MQ=255) g‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAAGATCGAAATCACTGCCCATCTCTACAACGTg > 2:893637/1‑201 (MQ=255) aCGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAAGATCGAAATCACTGCCCATCTCTACAACGTGGCTGACCCTCTACCTGCCGAACATTTTGGGGCCTa < 1:407232/235‑1 (MQ=255) aagaagGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAATATCGAAATCACTGCCCATCTCTACAACGTGGCTGACCCTCTACCTGCCGAACAtt > 2:591125/1‑220 (MQ=255) gtCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCCCGATCTTGGATGTCGATGAGCGAATCGTCACCTCAATACGGCGCTTCGGTGAAAAGATAGCGCCCag > 2:526162/1‑154 (MQ=255) tCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAAGATCGAAATCACTGCCCATCTCTACAACGTGGCTGACCCTCTACCTGCCGAACATTTTGGGGCCTACGACGGCTTTCATATc < 1:381358/236‑1 (MQ=255) | GCAGGTAGCCCTTAGCCATTAGCTGTCCATCAACGCTAAGGATCAGCCGCTGACATGGAGGTTGATAGTGAAGTTCGATCTAAGGAATGCGATCAATAGCATATCTGACGTGGTGATGAATCGACCCGCCCCCTTGCGCGAGTTCGACCAGATCTACATGAAGGTCGCGGATATGGTCATCCAGGCCGAGTACGTCGCAAGGGTCTTCG‑ACGGGAAGAAGGTGGTCTTCGTTGGTGACGGCGATGGGATAGCCCTTTCAGCTGCGCATCTCAAAGCCCAGGAGGTAATCAGCTACGGGCCAAAATCGATCACGCTCCTGGATTTCGATGAGCGAATCGTCAACTCAGTACGGCGATTCGGTGAAAAACTAGCGCCCAAGATCGAAATCACTGCCCATCTCTACAACGTGGCTGACCCTCTACCTGCCGAACATTTTGGGGCCTACGACGGCTTTCATATC > AE015451/6150929‑6151388 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |