| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AE015451 | 213,601 | G→C | 5.4% | V6369V (GTG→GTC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451 | 213,601 | 0 | G | C | 5.4% | 312.1 / 4.4 | 90 | V6369V (GTG→GTC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base G (36/49); new base C (2/3); total (38/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.68e-01 | |||||||||||
ATGCCCAGGTCATCATCAAGGCTGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGTACCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGAAGGT > AE015451/213375‑213820 | aTGCCCAGGTCATCATCAAGGCTGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAgg < 1:693784/235‑1 (MQ=255) aGGTCATCATCAAGGCTGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAggcggc > 2:1077649/1‑233 (MQ=255) tcatcaAGGCTGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTAc < 1:975407/235‑1 (MQ=255) atcaAGGCTGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTAc > 2:938419/1‑233 (MQ=255) caAGGCTGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACATCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGAcc > 1:1045612/1‑214 (MQ=255) aaaCCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGcc > 1:99344/1‑234 (MQ=255) aaaCCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGCTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAggcg > 2:623354/1‑210 (MQ=255) aaCCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGa > 1:280766/1‑236 (MQ=255) cgcCATCCACCCACGCTGCGCAAGGCGAGGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTAc < 1:311039/211‑1 (MQ=255) acCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCt < 1:1005284/236‑1 (MQ=255) ccACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGc < 1:938768/236‑1 (MQ=255) cGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAACTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAggcg < 1:683531/188‑1 (MQ=255) tGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACTGACGCAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACAcc > 1:35456/1‑202 (MQ=255) gcgcAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACcaa < 1:248317/215‑1 (MQ=255) aaGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCgag > 2:445522/1‑185 (MQ=255) aaGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATc < 1:215800/200‑1 (MQ=255) aaGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATcaacaa < 1:834190/235‑1 (MQ=255) aCGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGc < 1:512655/235‑1 (MQ=255) aCGTCGACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTAc < 2:252557/181‑1 (MQ=255) cGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGCTGACCGCGACCCCTTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGcct > 1:756072/1‑216 (MQ=255) cGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTAc > 2:250648/1‑180 (MQ=255) cGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACcaaca > 2:825398/1‑203 (MQ=255) aCAACGATGCTGGCCAGAGCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGgcggcg < 2:290607/168‑1 (MQ=255) cTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCCCGCTg > 1:388445/1‑236 (MQ=255) cTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCt > 1:941886/1‑235 (MQ=255) cTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTg < 1:247745/236‑1 (MQ=255) tGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCGGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGa > 1:241096/1‑236 (MQ=255) aTCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATc < 2:144542/168‑1 (MQ=255) aGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGc < 2:941883/234‑1 (MQ=255) aTTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATcaac > 1:240770/1‑189 (MQ=255) ttAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACcaca > 1:648460/1‑195 (MQ=255) ttAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGtc > 2:715986/1‑233 (MQ=255) aactCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAGCTGGGCGGCGCCGCTACGGTCCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCaacaac < 1:233973/186‑1 (MQ=1) cgcggcggTGGACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGGACCGCTACGGTTGATGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAgg < 2:184560/127‑1 (MQ=11) cGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTg < 1:309862/197‑1 (MQ=255) ggCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTg < 1:1080238/235‑1 (MQ=255) ggCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTg < 1:546484/235‑1 (MQ=255) aGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGATCCCGTCGGTGACCGAAGGCGGCGAGATTAc < 2:661250/135‑1 (MQ=255) aGTGGACGCCACTAGTGCGACCTTCTAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTAc > 1:661253/1‑135 (MQ=255) gACGCCACTGGTGCGACCTTCGAGAACCTGGAGCTGGGCGGCGACGCGTCGGTGCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTCACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAAcc < 1:704490/178‑1 (MQ=11) gACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCaa < 1:734123/236‑1 (MQ=255) cACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAAc < 1:497024/232‑1 (MQ=39) cACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCa < 1:1077652/236‑1 (MQ=255) aCTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACTCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCAc > 2:498489/1‑137 (MQ=255) cTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGc < 1:666272/203‑1 (MQ=40) tGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACcac > 1:24604/1‑172 (MQ=255) tGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATCACCTACACCATc > 1:408841/1‑133 (MQ=37) gTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGgcggcg < 1:659007/114‑1 (MQ=39) ttCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTCACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATAACCGTGCCGGCCAACGGccc > 1:331740/1‑222 (MQ=25) aaCCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGc < 1:250651/186‑1 (MQ=39) aaCTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGCCCAACAAAGACGGCCTGCCGATcaac > 2:57867/1‑143 (MQ=255) aCTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACg > 2:310780/1‑166 (MQ=40) tGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGc < 2:922316/199‑1 (MQ=40) tGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCg < 1:557543/236‑1 (MQ=255) tGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCg < 1:825401/236‑1 (MQ=255) gcggcAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCg < 2:491112/233‑1 (MQ=255) ggcAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCg > 1:915774/1‑129 (MQ=255) ggcAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCg < 2:915771/129‑1 (MQ=255) ggcAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAACACCGTCATCACCGTGCCGGACAACGGCAcc > 2:243951/1‑204 (MQ=255) ggcAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTcc > 1:925699/1‑230 (MQ=255) ggCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGCTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAAc < 1:484216/192‑1 (MQ=37) ggCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGCTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAAc > 2:484213/2‑193 (MQ=37) cGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCCACCGt > 2:731337/1‑216 (MQ=255) gCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTa < 1:715989/236‑1 (MQ=255) ggTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACg < 2:834726/233‑1 (MQ=255) ggTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTc < 2:1022206/235‑1 (MQ=255) tGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGTACCAAc < 1:785240/236‑1 (MQ=255) cccGACCCCACCGACGAAGTAGTGGCCAAGTGGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCGACCCCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGt < 2:353838/188‑1 (MQ=255) acacCACCGACGAAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGTACCAACGACCCt > 1:1054913/1‑236 (MQ=14) caccacCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGTACCAACGACCCt < 1:730475/235‑1 (MQ=255) accaccGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCgg < 1:206488/205‑1 (MQ=40) cgacgaAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTcc > 2:146564/1‑198 (MQ=18) cgacgaAGTCGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGTACCAACGACCCTGTCGTg < 1:498220/235‑1 (MQ=17) cgacgaAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTc < 1:19282/214‑1 (MQ=40) cgaAGTCGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAggcggc < 2:19448/49‑1 (MQ=255) cgaAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACggt > 2:333800/1‑87 (MQ=17) gtagtGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGTACCAACGACCCTGTCGTGATGTCGAt > 1:106652/1‑236 (MQ=40) agtGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGTACCAACGACCCTGTCGTGATGTCGATc < 1:938422/235‑1 (MQ=255) gggCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAAc < 2:244386/132‑1 (MQ=21) ccAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCTTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGTACCAACg < 1:577403/210‑1 (MQ=255) gACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGc > 2:1082722/1‑93 (MQ=37) gACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGc < 1:1082725/93‑1 (MQ=37) gACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAAc > 1:898306/1‑184 (MQ=255) gACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAAc < 2:898303/184‑1 (MQ=40) gcgACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGTACCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGAAGGt > 2:935677/1‑234 (MQ=40) gACCCCGACGGTGACCGAAGGCGGCGAGAATACCTACCCCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTa < 2:280763/183‑1 (MQ=255) cGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACACCGTCTACGTCGGTACCAACGACCCTGTCGCGAGGt > 2:346385/1‑207 (MQ=255) gTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCa > 2:70273/1‑38 (MQ=40) tCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGc < 2:747360/40‑1 (MQ=40) cGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGc < 1:197535/39‑1 (MQ=40) | ATGCCCAGGTCATCATCAAGGCTGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATTAATTCGGCAGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTAGTGGCCAAGTTGACCGCGACCCCGTCGGTGACCGAAGGCGGCGAGATTACCTACACCATCACGCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGTACTGCCACCGTGACTGCTCCGGACAACGTCTACGTCGGTACCAACGACCCTGTCGTGATGTCGATCGCTACCGTTGAAGGT > AE015451/213375‑213820 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |