New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	409939 =	46 (1.150)	3 (0.080)	3/320	NT	7.1%	coding (725/2646 nt)	aceE	Pyruvate dehydrogenase E1 component
	?	AE015451	410027 =	35 (0.920)					coding (637/2646 nt)	aceE	Pyruvate dehydrogenase E1 component

CTGGAAGCCCGTGGCTTCATCCCGGCCGGCAAGCAGAAGGTCTGGTGCTTCATGGGCGACGGTGAGTGCGACGAGCCGGAATCCCTGGGTGCAATCGCCCTGGCCGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/410048‑409939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggccgGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGCCTGGTAGATCGCCTGGATCGGGCCCAGACCCATCGAAACGGTCGGGAACTGCCAGAAGTCAGGCATCAGCCATGGGTGCGGGTACGAAGACAGGCCGTTGCCGTCCACTTCCTGGCGGAAGTTGTTCATCTGGTCTTCGCTGATACGGCCTTCCATGAAGGCACGGGCGTAGACGCCTGGAGATGCGTGG  >  AE015451/410027‑410256                                                                                                                                                                                                                                                                                                                                                      CTGGAAGCCCGTGGCTTCACCCCGGCCGGCAAGCAGAAGGTCTGGTGCTTCATGGGCGCCGGTGAGTGCGACGAGCCGGAATCCCTGGGTGCAATCGCCCTGGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGCCTGGTAGATCGCCTG                                                                                                                                                                                 <  1:227038/165‑1                                      AGGTCGGGTGCTTCATGGGCGACGGTGAGTGCGACGAGCCGGACTCCCTGGGTGCAATCGCCCTGGCCGGCCGGGATGCAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGCCTGGTAGATCGCCTGG                                                                                                                                                                                <  1:639222/129‑1                                                                       ACGAGCCGGAATCCCTGGGTGCAATCGCCCTGGCCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCAT                                                                                                                                                                                                         <  2:655376/71‑1                                                                                                        CCGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGCCTGGTAGATCGCCTGGATCGGGCCCAGACCCATCGAAACGGTCGGGAACTGCCAGAAGTCAGGCATCAGCCATGGGTGCGGGTACGAAGACAGGCCGTTGCCGTCCACTTCCTGGCGGAAGTTGTTCATCT                                                             <  2:283575/178‑1                                                                                                         CGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGCCTGGTAGATCGCCTGGATCGGGCCCAGACCCATCGAAACGGTCGGGAACTGCCAGAAGTCAGGCATCAGCCATGGGTGCGGGTACGAAGACAGGCCGTTGCCGTCCACTTCCTGGCGGAAGTTGTTCATCTGGTCTTCGCTGATACGGCCTTCCATGAAGGCACGGGCGTAGACGCCTGGAGATGCGTGG  <  1:322879/236‑1                                                                                                         CGGCCGGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGCCTGGTAGATCGCCTGGATCGGGCCCAGACCCATCGAAACGGTCGGGAACTGCCAGAAGTCAGGCATCAGCCATGGGTGCGGGTACGAAGACAGGCCGTTGCCGTCCACTTCCTGGCGG                                                                          >  1:582533/1‑164                                                                                                              GGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGCCTGGTAGATCGCCTGGATCGGGCCCAGACCCATCGAAACGGTCGGGAACGGCCAGAAG                                                                                                                                      >  2:19786/1‑99                                                                                                                                                                                                                                                                                                                                                      CTGGAAGCCCGTGGCTTCATCCCGGCCGGCAAGCAGAAGGTCTGGTGCTTCATGGGCGACGGTGAGTGCGACGAGCCGGAATCCCTGGGTGCAATCGCCCTGGCCGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/410048‑409939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggccgGGATGAAGCCACGGGCTTCCAGGTACTTCATGAAGCGTGCCTGGTAGATCGCCTGGATCGGGCCCAGACCCATCGAAACGGTCGGGAACTGCCAGAAGTCAGGCATCAGCCATGGGTGCGGGTACGAAGACAGGCCGTTGCCGTCCACTTCCTGGCGGAAGTTGTTCATCTGGTCTTCGCTGATACGGCCTTCCATGAAGGCACGGGCGTAGACGCCTGGAGATGCGTGG  >  AE015451/410027‑410256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.