New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 49920236 (0.900)3 (0.080)
+GGGCATGCCC		 3/316 NT 8.1% intergenic (+46/‑250) uhpA/PP_0411 DNA‑binding response regulator UhpA/Polyamine ABC transporter, ATP‑binding protein
?AE015451 = 499202 36 (0.900)intergenic (+46/‑250) uhpA/PP_0411 DNA‑binding response regulator UhpA/Polyamine ABC transporter, ATP‑binding protein

TCGGAGCGGGAATTTTCGGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/498974‑499202
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCCAGCGAGTTCACTTTCAACTTCTGCATCAGGCGTGCCTTGTGGGTGCTGATGGTCTTGCTCGACAGCGCCAACTGCTGGGCGATGTCGTTGACGTTGGCGCCCTGGGCCAGGCGCTCGAACACCGAAAATTCCCGCTCC  <  AE015451/499202‑498976
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TCGGAGCGGGAATTTTCGGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATG                                                                                                                                                                                                                                        >  1:266621/1‑236
   GAGCGGGAATTTTCGGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCC                                                                                                                                                                                                                                      >  1:502643/1‑235
      CGGGAATTTTCGGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGC                                                                                                                                                                                                                                   <  1:398334/235‑1
                                                      GACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGC                                                                                                                                                                                                                                   >  1:214340/1‑187
                                                                              TCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCA                                                                                                                                                                                        <  1:746280/206‑1
                                                                                                               CTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCTCGCTaa                                                                                                                                                                                                                                >  1:30300/1‑131
                                                                                                                                                                   TGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCCAGCGAGTTCACTTTCAACTTCTGCATCAGGCGTGCCTT                                                                                                      >  2:266620/1‑203
                                                                                                                                                                                                    GTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCCAGCGAGTTCACTTTCAACTTCTGCATCAGGCGTGCCTTGTGGGTGCTGATGGTCTTGCTCGACAGCGCCAACTGCTGG                                                              >  2:578787/1‑210
                                                                                                                                                                                                         CGAGACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGC                                                                                                                                                                                                                                   <  2:626528/40‑1
                                                                                                                                                                                                                                   GCGGGCATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCCAGCGAGTTCACTTTCAACTTCTGCATCAGGCGTGCCTTGTGGGTGCTGATGGTCTTGCTCGACAGCGCCAACTGCTGGGCGATGTCGTTGACGTTGGCGCCCTGGGCCAGGCGCTCGAACACCGAA              >  1:16037/1‑227
                                                                                                                                                                                                                                         ATGCCCGCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCCAGCGAGTTCACTTTCAACTTCTGCATCAGGCGTGCCTTGTGGGTGCTGATGGTCTTGCTCGACAGCGCCAACTGCTGGGCGATGTCGTTGACGTTGGCGCCCTGGGCCAGGCGCTCGAACACCGAAAATTCCCGCTCC  >  1:750022/1‑233
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TCGGAGCGGGAATTTTCGGTGTTCGAGCGCCTGGCCCAGGGCGCCAACGTCAACGACATCGCCCAGCAGTTGGCGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/498974‑499202
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCTCCCACATAGGCTTCGGCAAGTTTCGGGCACCCGTATGTCGCAATCAGATCAGCTTGTGCTCCATGGCGTACTTCACCAGCTCCGCCAGCGAGTTCACTTTCAACTTCTGCATCAGGCGTGCCTTGTGGGTGCTGATGGTCTTGCTCGACAGCGCCAACTGCTGGGCGATGTCGTTGACGTTGGCGCCCTGGGCCAGGCGCTCGAACACCGAAAATTCCCGCTCC  <  AE015451/499202‑498976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.