New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	682075 =	31 (0.780)	4 (0.110)	4/308	NT	12.4%	coding (1198/1944 nt)	PP_0584	Methyl‑accepting chemotaxis transducer
	?	AE015451	682089 =	28 (0.760)					coding (1184/1944 nt)	PP_0584	Methyl‑accepting chemotaxis transducer

TGCGCCCGATCAACAGCGTCACCAATGGCCTGGAAGACATTGCCCAAGGTGAGGGTGACCTGACCCGCAACCTGGAAATCCGCGGCCGCGACGAAACCGCGCAACTGGCCAACTGGTTCAACCAGTTCCTCGGTGCCATTCGCAGCCTGATCCAGCACATCGGCACTGCTGCCAGCAAGATCCTCAGCACGTCCAGCAGCTCGACCCGCGTCTCCAGTGACATGGCCGAGGCGGCCGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/682317‑682075 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggccggccgccTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAGGTTGCGGGTCAGGTCACCCTCACCTTGGGCAATGTCTTCCAGGCCATTG  >  AE015451/682089‑682295                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGCGCCCGATCAACAGCGTCACCAATGGCCTGGAAGACATTGCCCAAGGTGAGGGTGACCTGACCCGCAACCTGGAAATCCGCGGCCGCGACGAAACCGCGCAACTGGCCAACTGGTTCAACCAGTTCCTCGGTGCCATTCGCAGCCTGATCCAGCACATCGGCACTGCTGCCAGCAAGCTCCTCAGCACGTCCAGCAGCTCGACCCGCGTCTCCAGTGACATGCCCGAGG                                                                                                                                                                                                                             >  1:217213/1‑231                                                                                                                  TGGTTCAACCAGTTCCTCGGTGCCATTCGCAGCCTGATCCAGCACATCGGCACTGCTGCCAGCAAGATCCTCAGCACGTCCAGCAGCTCGACCCGCGTCTCCAGTGACATGGCCGAGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGT                                                                                                                                                                                       <  2:482921/156‑1                                                                                                                                  TCGGTGCCATTCGCAGCCTGACCCAGCACATCGGCACTGCTGCCAGCAAGGTCCTCAGCACGCCCAGCAGCTCGCCCCGCGTCTCCAGTGACATGGCCGAGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGC                                                                                                                                                                               <  1:359262/148‑1                                                                                                                                                                   GCACTGCTGCCAGCAAGATCCTCAGCACGTCCAGCAGCTCGACCCGCGTCTCCAGTGACATGGCCGAGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGCGCTGAGGACCTTG                                                                                                                                                           >  1:741506/1‑135                                                                                                                                                                    CACTGCTGCCAGCAAGATCCTCAGCACGTCCAGCAGCTCGACCCGCGTCTCCAGTGACATGGCCGAGGCGGCCGGCCGCCT                                                                                                                                                                                                                >  1:267895/1‑81                                                                                                                                                                                 AAGATCCTCAGCACGTCCAGCAGCTCGACCCGCGTCTCCAGTGACATGGCCGAGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGGCGATGGGCTG                                                                                                                                    >  1:234323/1‑144                                                                                                                                                                                                                                     AGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTG                                                                                                                                               >  2:267894/1‑81                                                                                                                                                                                                                                        CGGCGGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAGGTTGCGGGTCAGGTCACCCTCACCTTGGGCAATGTCTTCCAGGCCATTG  <  2:284128/219‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGCGCCCGATCAACAGCGTCACCAATGGCCTGGAAGACATTGCCCAAGGTGAGGGTGACCTGACCCGCAACCTGGAAATCCGCGGCCGCGACGAAACCGCGCAACTGGCCAACTGGTTCAACCAGTTCCTCGGTGCCATTCGCAGCCTGATCCAGCACATCGGCACTGCTGCCAGCAAGATCCTCAGCACGTCCAGCAGCTCGACCCGCGTCTCCAGTGACATGGCCGAGGCGGCCGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/682317‑682075 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggccggccgccTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAGGTTGCGGGTCAGGTCACCCTCACCTTGGGCAATGTCTTCCAGGCCATTG  >  AE015451/682089‑682295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.