New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	830412 =	42 (1.050)	3 (0.080)	3/318	NT	7.3%	coding (787/1098 nt)	PP_0714	Transporter, PerM family
	?	AE015451	830513 =	37 (0.980)					coding (888/1098 nt)	PP_0714	Transporter, PerM family

ACCGGCATCGGTACATCAACCCCGCGCCCCAGCAGCAGCGGTTTGAGCACGTTGTCGGCAAGGCCGGCGACGAAGGTGTAGATGGCAAAAATGATGGTCGCCACCGTGAAGCCTTCGGCGTTGAACACATAAATGATCACCGGCAAGGTCACCAGCGTCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/830575‑830412 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtcgccggCCTTGCCGACAACGTGCTCAAACCGCTGCTGCTGGGGCGCGGGGTTGATGTACCGATGCCGGTGGTACTGATCGGGGCATTAGGTGGCATGGTGGTCAAAGGCATCATCGGCTTGTTTATCGGCCCGGTAATCCTCGGCGTGACGTACGTGCTGTTCTGGCAATGGGTTGCGCTGCAGGTGCCGG  >  AE015451/830513‑830697                                                                                                                                                                                                                                                                                                                                                               ACCGGCATCGGTACATCAACCCCGCGCCCCAGCAGCAGCGGTTTGAGCACGTTGTCGGCAAGGCCGGCGACGAAGGTGTAGATGGCAAAAATGATGGTCGCCACCGTGAAGCCTTCGGCGTTGAACACATAAATGATCACCGGCAAGGTCACCAGCGTCGCCGGCCTTGCCGACAACGTGCTCAAAC                                                                                                                                                                    <  1:660612/187‑1                                                       TCGGCAAGGCCGGCGACGAAGGTGGAGATGGCAAAAATGAGGGTCGCCACCGTGAAGCCTTCGGCGTTGAACACATAAATGATCACCGGCAAGGTCACCAGCGTCGCCGGCCTTGCCGACAACGTGCTCAAACCGCTGCTGCTGGGGCGCGGGGTTGATGTACC                                                                                                                                     <  1:712607/164‑1                                                        gGGCAAGGCCGGCGACGAAGGTGTAGATGGCAAAAAGGATGGTCGCCGCCGTGAAGCCTGCGGCGGTGAACACATAAATGATCCCCGGCAAGGTCACCAGCGTC                                                                                                                                                                                                <  2:141974/103‑1                                                                                       AAAAATGATGGTCGACACCGTGAAGCCTTCGGCGTTGAACACATAAATGATCACCGGCAAGGTCACCAGCTTCGCCGGCCTTGCCGACAACGTGCTCAAACCGCTGCTGCTGGGGCGCGG                                                                                                                                                 <  1:34955/120‑1                                                                                                                                                            CGTCGCCGGCCTTGCCGACAACGTGCTCAAACCGCTGCTGCTGGGGCGCGGGGTTGATGTACCGATGCCGGTGGTACTGATCGGGGCATTAGGTGGCATGGTGGTCAAAGGCATCATCGGCTTGTTTATCGGCCCGGTAATCCTCGGCGTGACGTACGTGCTGTTCTGGCAATGGGTTGCGCTGCAGGTGCCGG  <  2:437876/194‑1                                                                                                                                                               CGCCGGCCTTGCCGACAACGTGCTCAAACCGCTGCTGCTGGGGCGCGGGGTTGATGTACCGATGCCGGTGGTACTGATCGGGGCATTAGGTGGCATGGTGGTCAAAGGCATCATCGGCTTGTTTATCGGCCCGGTAATCCTCGGCGTGgc                                           >  1:121848/1‑148                                                                                                                                                               CGCCGGCCTTGCCGACAACGTGCTCAAACCGCTGCTGCTGGG                                                                                                                                                       >  1:247492/1‑42                                                                                                                                                                                                                                                                                                                                                               ACCGGCATCGGTACATCAACCCCGCGCCCCAGCAGCAGCGGTTTGAGCACGTTGTCGGCAAGGCCGGCGACGAAGGTGTAGATGGCAAAAATGATGGTCGCCACCGTGAAGCCTTCGGCGTTGAACACATAAATGATCACCGGCAAGGTCACCAGCGTCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/830575‑830412 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtcgccggCCTTGCCGACAACGTGCTCAAACCGCTGCTGCTGGGGCGCGGGGTTGATGTACCGATGCCGGTGGTACTGATCGGGGCATTAGGTGGCATGGTGGTCAAAGGCATCATCGGCTTGTTTATCGGCCCGGTAATCCTCGGCGTGACGTACGTGCTGTTCTGGCAATGGGTTGCGCTGCAGGTGCCGG  >  AE015451/830513‑830697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.