New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	981325 =	40 (1.000)	4 (0.110)	4/316	NT	9.0%	coding (202/1863 nt)	hscA	DnaK‑like molecular chaperone specific for IscU
	?	AE015451	981403 =	43 (1.140)					coding (280/1863 nt)	hscA	DnaK‑like molecular chaperone specific for IscU

GCCACCCAAGGTGGCTTCGGCCCGTTCGCGCAACACCTTCAGGATGTCGGCAGACACTTCCACAGGGCTTTTCGGCCCCTGCACGGTGTCGATGAACGGCATGTGCGATTCACCACCCACAAAGCGGTATGGCAGTTGCTCGCCCAGCTGCTTGACGTCGGCCAGGCCGCGCCCCATCAGGCGCTTGACCGACAGCACGGTGTTCAACGGGTCGCTGGAGGCAGCATCACGCGCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/981564‑981325 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcggcctgGCCGACGTCAAGCAGCTGGGCGAGCAACTGCCATACCGCTTTGTGGGTGGTGAATCGCACATGCCGTTCATCGACACCGTGCAGGGGCCGAAAAGCCCTGTGGAAGTGTCTGCCGACATCCTGAAGGTGTTGCGCGAACGGGCCGAAGCCACCTTGGGTGGCGAGCTGGTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCA  >  AE015451/981403‑981628                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCCACCCAAGGTGGCTTCGGCCCGTTCGCGCAACACCTTCAGGATGTCGGCAGACACTTCCACAGGGCTTTTCGGCCCCTGCACGGTGTCGATGAACGGCATGTGCGATTCACCACCCACAAAGCGGTATGGCAGTTGCTCGCCCAGCTGCTTGACGTCGGCCAGGCCGCGCCCCATCAGGCGCTTGACCGACAGCACGGTGTTCAACGGGTCGCTGGAGGCAGCATCACGCGCG                                                                                                                                                                                                                                         <  1:679459/235‑1  CCACCCAAGGTGGCTTCGGCCCGTTCGCGCAACACCTTCAGGATGTCGGCAGACACTTCCACAGGGCTTTTCGGCCCCTGCACGGTGTCGATGAACGGCATGTGCGATTCACCACCCACAAAGCGGTATGGCAGTTGCTCGCCCAGCTGCTTGACGTCGGCCAGGCCGCGCCCCATCAGGCGCTTGACCGACAGCACGGTGTTCAACGGGTCGCTGGAGGCAGCATCACGCGCG                                                                                                                                                                                                                                         <  2:359687/234‑1                                              GTCGGCAGACCCTTCCACAGGGCTTTTCGGCCCCTGCACGGTGTCGATGAACGGCATGTGCGATTCACCCCCCACAAAGCGGTATGGCAGTTGCTCGCCCAGCTGCTTGACGTCGGCCAGGCCGCGCCCCATCAGGCGCTTGACCGACAGCACGGTGTTCAACGGGTCGCTGGAGGCAGCATCACGCGCGGCCTGGCCGACGTCAAGCAGCTGGGCGAGCAACTGCCATACCGCTT                                                                                                                                                                                           <  1:253994/236‑1                                                                              CCTGCACGGTGTCGATGAACGGCATGTGCGATTCACCACCCACAAAGCGGTATGGCAGTTGCTCGCCCAGCTGCTTGACGTCGGCCAGGCCGCGCCCCATCAGGCGCTTGACCGACAGCACGGTGTTCAACGGGTCGCTGGAGGCAGCATCACGC                                                                                                                                                                                                                                            <  2:276000/155‑1                                                                                                     ATGTGCGATTCACCACCCACAAAGCGGTATGGCAGTTGCTCGCCCAGCTGCTTGACGTCGGCCAGGCCGCGCCCCATCAGGCGCTTGACCGACAGCACGGTGTTCAACGGGTCGCTGGAGGCAGCATCACGCGCGGCCTGGCCGACGTCAAGCAGCTGGGCG                                                                                                                                                                                                              <  1:53287/162‑1                                                                                                                                                                           GCCCCATCAGGCGCTTGACCGACAGCACGGTGTTCAACGGGTCGCTGGAGGCAGCATCACGCGCGGCCTGGCCGACGTCAAGCAGCTGGGCGAGCAACTGCCA                                                                                                                                                                                                   <  1:664684/103‑1                                                                                                                                                                           GCCCCATCAGGCGCTTGACCGACAGCACGGTGTTCAACGGGTCGCTGGAGGCAGCATCACGCGCGGCCTGGCCGACGTCAAGCAGCTGGGCGAGCAACTGCCA                                                                                                                                                                                                   >  2:664683/1‑103                                                                                                                                                                                                                                         GCGGCCTGGCCGACGTCAAGCAGCTGGGCGAGCAACTGCCATACCGCTTTGTGGGTGGTGAATCGCACATGCCGTTCATCGACACCGTGCAGGGGCCGAAAAGCCCTGTGGAAGTGTCTGCCGACATCCTGAAGGTGTTGCGCGAACGGGCCGAAGCCACCTTGGGTGGCGAGCTGGTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCA  >  2:429544/1‑234                                                                                                                                                                                                                                               TGGCCGACGTCAAGCAGCTGGGCGAGCAACTGCCATACCGCTTTGTGGGTGGTGAATCGCACATGCCGTTCATCGACACCGTGCAGGGGCCGAAAAGCCCTGTGGAAGTGTCTGCCGA                                                                                                                >  2:201725/1‑118                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCCACCCAAGGTGGCTTCGGCCCGTTCGCGCAACACCTTCAGGATGTCGGCAGACACTTCCACAGGGCTTTTCGGCCCCTGCACGGTGTCGATGAACGGCATGTGCGATTCACCACCCACAAAGCGGTATGGCAGTTGCTCGCCCAGCTGCTTGACGTCGGCCAGGCCGCGCCCCATCAGGCGCTTGACCGACAGCACGGTGTTCAACGGGTCGCTGGAGGCAGCATCACGCGCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/981564‑981325 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcggcctgGCCGACGTCAAGCAGCTGGGCGAGCAACTGCCATACCGCTTTGTGGGTGGTGAATCGCACATGCCGTTCATCGACACCGTGCAGGGGCCGAAAAGCCCTGTGGAAGTGTCTGCCGACATCCTGAAGGTGTTGCGCGAACGGGCCGAAGCCACCTTGGGTGGCGAGCTGGTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCA  >  AE015451/981403‑981628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.