New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1331993	NA (NA)	3 (0.080)	3/328	NT	NA	coding (1218/1644 nt)	PP_1157	Acetolactate synthase
	?	AE015451	= 1332001	NA (NA)					coding (1226/1644 nt)	PP_1157	Acetolactate synthase

GTGAAGCCAACGAAGCACAGATCGCCGAAGGCGCCGACGACGACCGCTTCCCGGTCTACCCACAGCGCATGGTGGCTGACATCCGTCGTGTACTGCCGTCCGAAGGCATCGTCGCCCTGGACAACGGCATCTACAAGATCTGGTTCGCCCGCAACTACAAAGCGCACAAGCCAAACACCGTGCTGCTGGACAACGCCCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1331791‑1331993 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgCCCATGGTCGCCAGGGCGTTGTCCAGCAGCACGGTGTTTGGCTTGTGCGCTTTGTAGTTGCGGGCGAACCAGATCTTGTAGATGCCGTTGTCCAGGGCGACGATGCCTTCGGACGGCAGTACACGACGGATGTCAGCCACCATGCGCTGTGGGTAGACCGGGAAGCGGTCG  <  AE015451/1332001‑1331831                                                                                                                                                                                                                                                                                                                                                                                        GTGAAGCCAACGAAGCACAGATCGCCGAAGGCGCCGACGACGACCGCTTCCCGGTCTACCCACAGCGCATGGTGGCTGACATCCGTCGTGTACTGCCGTCCGAAGGCATCGTCGCCCTGGACAACGGCATCTACAAGATCTGGTTCGCCCGCAACTACAAAGCGCACAAGCCAAACACCGTGCTGCTGGACAACGCCCTGGC                                                                                                                                                                              >  1:274985/1‑202            GAAGCACAGATCGCCGAAGGCGCCGACGACGACCGCTTCCCGGTCTACCCACAGCGCATGGTGGCTGACATCCGTCGTGTACTGCCGTCCGAAGGCATCGTCGCCCTGGACAACGGCATCTACAAGATCTGGTTCGCCCGCAACTACAAAGCGCACAAGCCAAACACCGTGCTGCTGGACAACGCCCTG                                                                                                                                                                                >  2:352590/1‑189                                                             CACAGCGCATGGTGGCTGACATCCGTCGTGTACTGCCGTCCGAAGGCATCGTCGCCCTGGACAACGGCATCTACAAGATCTGGTTCGCCCGCAACTACAAAGCGCACAAGCCAAACACCGTGCTGCTGGACAACGCCCTG                                                                                                                                                                                <  1:159185/140‑1                                                             CACAGCGCATGGTGGCTGACATCCGTCGTGTACTGCCGTCCGAAGGCATCGTCGCCCTGGACAACGGCATCTACAAGATCTGGTTCGCCCGCAACTACAAAGCGCACAAGCCAAACACCGTGCTGCTGGACAACGCCCTG                                                                                                                                                                                >  2:159185/1‑140                                                                                                                                   CTACAAGATCTGGTTCGCCCGCAACTACAAAGCGCACAAGCCAAACACCGTGCTGCTGGACAACGCCCTGGCGCCCATGGTCGCCAGGGCGTTGTCCAGCAGCACGGTGTTTGGCTTGTGCGCTTTGTAGTTGCGGGCGAACCAGATCTTGTAGATGCCGTTGTCCAGGGCGACGATGCCTTCGGACGGCAGTACACGACGGATGTCAGCCACCATGC                            >  2:713181/1‑218                                                                                                                                            CTGGTTCGCCCGCAACTACAAAGCGCACAAGCCAAACACCGTGCTGCTGGACAACGCCCTGGCGCCCATGGTCGCCAGGGCGTTGTCCAGCAGCACGGTGTTTGGCTTGTGCGCTTTGTAGTTGCGGGCGAACCAGATCTTGTAGATGCCGTTGTCCAGGGCGACGATGCCTTCGGACGGCAGTACACGACGGATGTCAGCCACCATGCGCTGTGGGTAGACCGGGAAGCGGTCG  >  1:352591/1‑235                                                                                                                                                       GCAACTACAAAGCGCACAAGCCAAACACCGTGCTGCTGGACAACGCCCTGGCGCCCATGGTCGCCAGGGCGTTGTCCAGCAGCACGGTGT                                                                                                                                        >  2:250234/1‑90                                                                                                                                                                                                                                                                                                                                                                                        GTGAAGCCAACGAAGCACAGATCGCCGAAGGCGCCGACGACGACCGCTTCCCGGTCTACCCACAGCGCATGGTGGCTGACATCCGTCGTGTACTGCCGTCCGAAGGCATCGTCGCCCTGGACAACGGCATCTACAAGATCTGGTTCGCCCGCAACTACAAAGCGCACAAGCCAAACACCGTGCTGCTGGACAACGCCCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1331791‑1331993 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgCCCATGGTCGCCAGGGCGTTGTCCAGCAGCACGGTGTTTGGCTTGTGCGCTTTGTAGTTGCGGGCGAACCAGATCTTGTAGATGCCGTTGTCCAGGGCGACGATGCCTTCGGACGGCAGTACACGACGGATGTCAGCCACCATGCGCTGTGGGTAGACCGGGAAGCGGTCG  <  AE015451/1332001‑1331831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.