New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1335821 =	38 (0.950)	4 (0.110)	4/314	NT	10.9%	coding (35/672 nt)	PP_1161	putative Lipoprotein
	?	AE015451	1335849 =	30 (0.800)					coding (63/672 nt)	PP_1161	putative Lipoprotein

CATTGCTCCGGGAGGACAGTGACCGGCGAACTGGCCAGTGCGACGAAAAAGCCATTGAGCTCGGCCAGGTTCAGCACCGAGTAGTCGTTGCCATAGGTGATCAGCAGGTCTTCAAGGCGGTCGAGTTCTTTTTCGCTGAGTACGGGGAGCATGGGTAAGAATCCTGGGAAGCAAAAGTGTGTGCACCCTAGCACAGCAACGCCGGAAGGGCTGCCCGCGCGAACACCCGCGCGGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1336058‑1335821 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcgggcagCCCTTCCGGCGTTGCTGTGCTAGGGTGCACACACTTTTGCTTCCCAGGATTCTTACCCATGCTCCCCGTACTCAGCGAAAAAGAACTCGACCGCCTTGAAGACCTGCTGATCACCTATGGCAACGACTACTCGGTGCTGAACCTGGCCGAGCTCAATGGCTTTTTCGTCGCA  >  AE015451/1335849‑1336020                                                                                                                                                                                                                                                                                                                                                                                                                            CATTGCTCCGGGAGGACAGTGACCGGCGAACTGGCCAGTGCGACGAAAAAGCCATTGAGCTCGGCCAGGTTCAGCACCGAGTAGTCGTTGCCATAGGTGATCAGCAGGTCTTCAAGGCGGTCGAGTTCTTTTTCGCTGAGTACGGGGAGCATGGGTAAGAATCCTGGGAAGCAAAAGTGTGTGCACCCTAGCACAGCAACGCCGGAAGGGCTGCCCGCGCGAACACCCGCGCGGGC                                                                                                                                                                                <  1:339044/236‑1        CCGGGAGGACAGTGACCGGCGAACTGGCCAGTGCGACGAAAAAGCCATTGAGCTCGGCCAGGTTCAGCACCGAGTAGTCGTTGCCATAGGTGATCAGCAGGTCTTCAAGGCGGTCGAGTTCTTTTTCGCTGAGTACGGGGAGCATGGGTAAGAATCCTGGGAAGCAAAAGTGTGTGCACCCTAGCACAGCAACGCCGGAAGGGCTGCCCGCGCGAACACCCGCGCGGGCAGC                                                                                                                                                                             <  1:749600/232‑1                                               AAAAGCCATTGAGCTCGGCCAGGTTCAGCACCGAGTAGTCGTTGCCATAGGTGATCAGCAGGTCTTCAAGGCGGTCGAGTTCTTGTTCGCTGAGTACGGGGAGCATGCGTAAGAATCCTGGGAAGCAAAAGTGTGTGCGCCCTAGCACAGCAACGCCGGAAGGGCTGCCCGCGCGAACACCCGCGCGGGC                                                                                                                                                                                <  1:78022/190‑1                                                                        CAGCACCGAGTAGTCGTTGCCATAGGTGATCAGCAGGTCTTCAAGGCGGTCGAGTTCTTTTTCGCTGAGTACGGGGAGCATGGGTAAGAATCCTGGGAAGCAAAAGTGTGTGCACCCTAGCACAGCAACGCCGGAAGGGCTGCCCGCGCGAACACCCGCGCGGGCAGCCCTTCCGGCGTTGCTGTGCTAGGGTGCACACACTTTTGCTTCC                                                                                                                                  <  2:461825/211‑1                                                                             CCGAGTAGTCGTTGCCATAGGTGATCAGCAGGTCTTCAAGGCGGTCGAGTTCTTTTTCGCTGAGTACGGGGAGCATGGGTAAGAATCCTGGGAAGCAAAAGTGTGTGCACCCTAGCACAGCAACGCCGGAAGGGCTGCCCGCGCGAACACCCGCGCGGGCAGCCCTTCCGGCGTTGCTGTGCTAGGGTGCACACACTTTTGCTTCCC                                                                                                                                 <  1:219182/207‑1                                                                                                                                       GCTGAGTACGGGGAGCATGGGTAAGAATCCTGGGAAGCAAAAGTGTGTGCACCCTAGCACAGCAACGCCGGAAGGGCTGCCCGCGCGAACACCCGCGCGGGCAGCCCTTCCGGCGTTGCTGTGCTAGGGTGCACACACTTTTGCTTCCCAGGATTCTTACCCA                                                                                                                   <  1:645535/163‑1                                                                                                                                                                                                                     GCCCGCGCGAACACCCGCGCGGGCAGCCCTTCCGGCGTTGCTGTGCTAGGGTGCACACACTTTTGCTTCCCAGGATTCTTACCCATGCTCCCCGTACTCAGCGAAAAAGAACTCGACCGCCTTGAAGACCTGCTGATCACCTATGGCAACGACTACTCGGTGCTGAACCTGGCCGAGCTCAATGGCTTTTTCGTCGCA  >  2:561160/1‑198                                                                                                                                                                                                                                                                                                                                                                                                                            CATTGCTCCGGGAGGACAGTGACCGGCGAACTGGCCAGTGCGACGAAAAAGCCATTGAGCTCGGCCAGGTTCAGCACCGAGTAGTCGTTGCCATAGGTGATCAGCAGGTCTTCAAGGCGGTCGAGTTCTTTTTCGCTGAGTACGGGGAGCATGGGTAAGAATCCTGGGAAGCAAAAGTGTGTGCACCCTAGCACAGCAACGCCGGAAGGGCTGCCCGCGCGAACACCCGCGCGGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1336058‑1335821 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcgggcagCCCTTCCGGCGTTGCTGTGCTAGGGTGCACACACTTTTGCTTCCCAGGATTCTTACCCATGCTCCCCGTACTCAGCGAAAAAGAACTCGACCGCCTTGAAGACCTGCTGATCACCTATGGCAACGACTACTCGGTGCTGAACCTGGCCGAGCTCAATGGCTTTTTCGTCGCA  >  AE015451/1335849‑1336020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.