New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1737987 =	39 (0.980)	11 (0.310)	10/302	NT	20.0%	coding (32/348 nt)	yffB	putative glutathione‑dependent thiol reductase
	?	AE015451	= 1777401	53 (1.480)					intergenic (+135/+157)	PP_5476/PP_1585	conserved protein of unknown function/putative Antidote protein

AGCCCTCCAACCTTCCATGAGCAGCGGTCCCTGGCGGCCAGGCTACATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1738238‑1737987 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacggcatcaaagcctgGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCCCAGGCT  <  AE015451/1777401‑1777167                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGCCCTCCAACCTTCCATGAGCAGCGGTCCCTGGCGGCCAGGCTACATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTT                                                                                                                                                                                                                                                             <  2:628346/236‑1                 ATGAGCAGCGGTCCCTGGCGGCCAGGCTACATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTG                                                                                                                                                                                                                                             <  1:513935/236‑1                   GAGCAGCGGTCCCTGGCGGCCAGGCTACATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGTCATCAAAGCCTG                                                                                                                                                                                                                                             >  1:256235/1‑234                    gGCAGCGGGCCCTGGCGGCCAGGCTACATGACGAAGAAGGTCGAGATGCCCAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATC                                                                                                                                                                                                                                                     <  2:86920/224‑1                            TCCCTGGCGGCCAGGCTACATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCat                                                                                                                                                                                                                                              >  1:630955/1‑222                                  GCGGCCAGGCTACATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAA                                                                                                                                                                                                                               <  2:403679/233‑1                                     tCCAGGCTACATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCT                                                                                                                                                                                                                                              <  2:471749/214‑1                                                                            CTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATAT                                                                                                                                                                                     >  2:259921/1‑233                                                                              GCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAA                                                                                                                                                                                                                      <  1:721859/198‑1                                                                                      ACCGTTCGGCCAAGATGGCCGATCTATACCGGGACAGCTGTGGCGCTGAGTGGATCGATGTCGCATAAGCCTGCGACTAATTTTTGGGAGATATTGTGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTG                                                                                                                                                                                                                                             <  2:7985/167‑1                                                                                                            TCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCG                                                                                                                                                  <  1:556404/236‑1                                                                                                            TCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTC                                                                                                                                                   <  1:315104/235‑1                                                                                                                                         GGATCGATGTCGCATAATCCTGCGACTAATTTTTGCGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTC                                                                                                                                                   <  1:636937/206‑1                                                                                                                                                    GCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAA                                                                                                                                                                                         <  2:187831/157‑1                                                                                                                                                     CATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATCGCGCCTTTTTTGTTCGTTTCGACCCCAA                                                                                                                                           >  2:15798/1‑202                                                                                                                                                                   TAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACGATCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCAACGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAAGAGAATCAGGTGTTTACGG                                                                                                                        >  2:690569/1‑207                                                                                                                                                                                                                                 CTTACACTCTTTACGGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTACATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATATAATCAGGCGTT                                                                                                                             >  2:158601/1‑140                                                                                                                                                                                                                                      ACTCTGTACGGGATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGGTAAATCAATGCCGTAAAGCAAATATGGCGCATCGGAATTGCGCGTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGGTTACGGATGCATTTTG                                                                                                              <  2:212288/150‑1                                                                                                                                                                                                                                               GGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAA                  >  2:197104/1‑233                                                                                                                                                                                                                                               GGCATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAA                  >  2:414187/1‑233                                                                                                                                                                                                                                                  ATCAAAGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAG            >  1:319017/1‑236                                                                                                                                                                                                                                                       AGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCC        >  1:216697/1‑235                                                                                                                                                                                                                                                       AGCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATC         >  2:332479/1‑234                                                                                                                                                                                                                                                        GCCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCCCA      <  2:216697/236‑1                                                                                                                                                                                                                                                         CCTGGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCG                        >  2:313644/1‑217                                                                                                                                                                                                                                                            GGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCCCAGGCT  >  1:716214/1‑236                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGCCCTCCAACCTTCCATGAGCAGCGGTCCCTGGCGGCCAGGCTACATGACGAAGAAGGTCGAGATGCACAGCGACTGCTGGGTCACCGTTCGGCCAAGATGACCGATCTATACCGTGACAGCCGTGGCGCTGAGTGGATCGATGTCGCATAATCCTGCGACTAATTTTTGGGAGATATTGGGGAGGTTTTGGGGAGTAATCCCAGCCCCTTTAAATTCAATGACTTACACTCTTTACGGCATCAAAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1738238‑1737987 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacggcatcaaagcctgGGACGCCAAGTTAAACCGACTAAAGCCCAGTTAAATCAATGCCTTAAAGCAAATATGGCGCATCGGAATTGCGCCTTTTTTGTTCGTTTCGACCCCAATAGAATCAGGTGTTTACGGATGCATTTTGGGGAAGATTTACGCAACGATATCCTTCCCAGGCGTTCTGCCGACCAAGATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCCCAGGCT  <  AE015451/1777401‑1777167

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.