New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2295839 =	38 (0.950)	4 (0.110)	4/308	NT	10.4%	intergenic (+85/+48)	PP_5496/PP_2023	conserved exported protein of unknown function/Glutathione S‑transferase family protein
	?	AE015451	2295853 =	34 (0.930)					intergenic (+99/+34)	PP_5496/PP_2023	conserved exported protein of unknown function/Glutathione S‑transferase family protein

GGTGGCTGGCTTCGGAGCTGTTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2295930‑2295839 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcatgcccgcTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACG  >  AE015451/2295853‑2295952                                                                                                                                                                                                  GGTGGCTGGCTTCGGAGCTGTTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCGGCACATGGGTCCGTGGGGGAGCGGGCATGCCCGCCCCCACACGGACCCCTGTGCAGCCCGATGTTTA                                                                     >  1:111110/1‑125     GCTGGCTTCGGAGCTGTTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGGTTAATCAGCGGACCCTGCTTGCCTTGCACAGCTCCGAAGCCAGCCACCCCTC                    >  1:638897/1‑170                     cTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCA                                                         <  1:677389/116‑1                                       CGCTGATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGGTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACG  >  1:389355/1‑154                                            ATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGC                                                                                                          <  2:375132/45‑1                                                                                   GCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAAT                                                                   <  1:375133/45‑1                                                                                                                                                                                                  GGTGGCTGGCTTCGGAGCTGTTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2295930‑2295839 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcatgcccgcTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACG  >  AE015451/2295853‑2295952

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.