New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2710846	46 (1.150)	3 (0.080)	3/308	NT	6.4%	intergenic (+149/+165)	PP_2373/PP_2374	conserved protein of unknown function/conserved protein of unknown function
	?	AE015451	= 2710904	46 (1.260)					intergenic (+207/+107)	PP_2373/PP_2374	conserved protein of unknown function/conserved protein of unknown function

CCTCTGCCTGATCGTTCTGGTGGTGGTCACTGCCGTGTATTGGGTCAGCCACCAGTGACTTGCAACTCAAGACCGTGATGTAGCAGGGGCGTCTGCGGGAGGGAATCTCGCAGGCGCTTTCTTATTGCCTGTGGCCGCCTCTTCGCGGTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGGGCAGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2710640‑2710846 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtttacccgcgaaTACGGTAGCGGCGGCAACGGTGAACGGCAGGTGGAAATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCTGCCCCTACGACGGTCCTGCGCCATTCTCAAGGGATATGTTTTCACCGCGAAGAGGCGGCCACAGGCAATAAGAAAGCGCCTGCGAGATTCCCTCCCGCAGACGCCCCTGCTACATCACGGTCTTGAGTTGCAAGTCACTGGTGGCTGACCCAAT  <  AE015451/2710904‑2710678                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCTCTGCCTGATCGTTCTGGTGGTGGTCACTGCCGTGTATTGGGTCAGCCACCAGTGACTTGCAACTCAAGACCGTGATGTAGCAGGGGCGTCTGCGGGAGGGAATCTCGCAGGCGCTTTCTTATTGCCTGTGGCCGCCTCTTCGCGGTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGGGCAGGTTTACCCGC                                                                                                                                                                                                                                        <  2:152547/204‑1     TGCCTGATCGTTCTGGTGGTGGTCACTGCCGTGTATTGGGTCAGCCACCAGTGACTTGCAACTCAAGACCGTGATGTAGCAGGGGCGTCTGCGGGAGGGAATCTCGCAGGCGCTTTCTTATTGCCTGTGGCCGCCTCTTCGCGGTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTGGTAGGGGCAGG                                                                                                                                                                                                                                                 >  2:354027/1‑191               TTCTGGTGGTGGTCACTGCCGTGTATTGAGTCAGCCACCAGTGACTTGCAACTCAAGACCGTGATGTAGCAGGGGCGTCTGCGGGAGGGAATCTCGCAGGCGCTTTCTTATTGCCTGTGGCCGCCTCTTCGCGGTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGGGCAGGTTTACC                                                                                                                                                                                                                                           >  2:217005/1‑187                    GTGGTGGTCACTGCCGTGTATTGGGTCAGCCACCAGTGACTTGCAACTCAAGACCGTGATGTAGCAGGGGCGTCTGCGGGAGGGAATCTCGCAGGCGCTTTCTTATTGCCTGTGGCCGCCTCTTCGCGGTGAAAACATATCCCTTGAGAATGGCGCAGGGCCGTCGTAGGGGCAGGTTTACCC                                                                                                                                                                                                                                          >  2:401785/1‑183                                                                                                                                   GTGGCCGCCTCTTCGCGGTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGGGCAGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAACGGC                                                                                                                                                                                                         <  1:476304/105‑1                                                                                                                                   GTGGCCGCCTCTTCGCGGTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGGGCAGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAACGGC                                                                                                                                                                                                         >  2:476303/1‑105                                                                                                                                                        AAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGGGCAGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAACGGCAGGTGGAAATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCTGCCCCTACGACGGTCCTGCGCCATTCTCAAGGGATATGTTTTCACCGCGAAGAGGCGGCCACAGGCAATAAGAAAGCGCCTGCGAGATTCCCTCCCGCAGACG                                                     >  1:383932/1‑232                                                                                                                                                                                                  GGTTTACCCGCGAATACGGTAGCGGCGGCAACGG                                                                                                                                                                                                                 <  2:293782/34‑1                                                                                                                                                                                                    TTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAACGGCAGGTGGAAATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCTGCCCCTACGACGGTCCTGCGCCATTCTCAAGGGATATGTTT                                                                                                                   >  1:406828/1‑126                                                                                                                                                                                                    TTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAACGGCAGGTGGAAATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCTGCCCCTACGACGGTCCTGCGCCATTCTCAAGGGATATGTTT                                                                                                                   <  2:406827/126‑1                                                                                                                                                                                                    TTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAA                                                                                                                                                                                                             >  1:693132/1‑36                                                                                                                                                                                                    TTTACCCGCGAATACGGTAGCGGCGGCAACGGTGAA                                                                                                                                                                                                             <  2:693131/36‑1                                                                                                                                                                                                      TACCCGCGAATACGGTAGCGGCGGCAA                                                                                                                                                                                                                    <  2:251871/27‑1                                                                                                                                                                                                        CCCGCGAATACGGTAGCGGCGGCAACGGTGAACGGCAGGTGGAAATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCTGCCCCTACGACGGTCCTGCGCCATTCTCAAGGGATATGTTTTCACCGCGAAGAGGCGGCCACAGGCAATAAGAAAGCGCCTGCGAGATTCCCTCCCGCAGACGCCCCTGCTACATCACGGTCTTGAGTTGCAAGTCACTGGTGGCTGACCCAAT  <  1:740136/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCTCTGCCTGATCGTTCTGGTGGTGGTCACTGCCGTGTATTGGGTCAGCCACCAGTGACTTGCAACTCAAGACCGTGATGTAGCAGGGGCGTCTGCGGGAGGGAATCTCGCAGGCGCTTTCTTATTGCCTGTGGCCGCCTCTTCGCGGTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGGGCAGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2710640‑2710846 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtttacccgcgaaTACGGTAGCGGCGGCAACGGTGAACGGCAGGTGGAAATTGGCCAGCAGGCCCGGCCCTTTCGCGGGTAAACCTGCCCCTACGACGGTCCTGCGCCATTCTCAAGGGATATGTTTTCACCGCGAAGAGGCGGCCACAGGCAATAAGAAAGCGCCTGCGAGATTCCCTCCCGCAGACGCCCCTGCTACATCACGGTCTTGAGTTGCAAGTCACTGGTGGCTGACCCAAT  <  AE015451/2710904‑2710678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.