New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3704879 =	41 (1.030)	3 (0.080)	3/330	NT	7.0%	coding (1123/2055 nt)	paaZ	oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase
	?	AE015451	3704899 =	40 (1.020)					coding (1103/2055 nt)	paaZ	oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase

GTGCACCGCCATACGCCGTGCGATCGTCCCGGCCAGGCACCTGGATGCCGTTGCCACCCGCCTGCGCGAGCGCCTGAGCAAGGTCGTGGTTGGCGACCCGTCGCTTGAAGGTGTGCGCATGGGCGCCCTGGCCTCCCATGACCAGCAGCGCGATGTCGGCGAGCGGGTGCGCAGCCTGCTGCAGAGTTGTGACCAGCTGTTCGGCGCCAGCGATGGCTTTGCCCCGCGGGGCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3705114‑3704879 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagCCATCGCTGGCGCCGAACAGCTGGTCACAACTCTGCAGCAGGCTGCGCACCCGCTCGCCGACATC  >  AE015451/3704899‑3704963                                                                                                                                                                                                                                                                                                               GTGCACCGCCATACGCCGTGCGATCGTCCCGGCCAGGCACCTGGATGCCGTTGCCACCCGCCTGCGCGAGCGCCTGAGCAAGGTCGTGGTTGGCGACCCGTCGCTTGAAGGTGTGCGCATGGGCGCCCTGGCCTCCCATGACCAGCAGCGCGATGTCGGCGAGCGGGTGCGCAGCCTGCTGCAGAGTTGTGACCAGCTGTTCGGCGCCAGCGATGGCTTTGCCCCGCGGGGCGAA                                                                    <  1:475707/235‑1                                                                                 AGGTCGTGGTTGGCGACCCGTCGCGTGAAGGTGTGCGCATGGGCGCCCTGGCCTCCCATGACCAGCAGCGCGATGTCGGCGAGCGGGTGCGCAGCCTGCTGCAGAGTTGTGACCAGCTGTTCGGCGCCAGCGATGGCTTTGCCCCGCGGGGCGAAGCCAT                                                               <  2:109017/160‑1                                                                                                                     GCATGGGCGCCCTGGCCTCCCATGACCAGCAGCGCGATGTCGGCGAGCGGGTGCGCAGCCTGCTGCAGAGTTGTGACCAGCTGTTCGGCGCCAGCGATGGCTTTGCCCCGCGGGGCGAAGCCATCGCTGGCGCCGAACAGCTGGTCACAACTCTGCAGCAGGCTGCGCACCCGCTCGCCGA      >  1:383972/1‑181                                                                                                                       ATGGGCGCCCTGGCCTCCCATGACCAGCAGCGCGATGTCGGCGAGCGGGTGCGCAGCCTGCTGCAGAGTTGTGACCAGCTGTTCGGCGCCAGCGATGGCTTTGCCCCGCGGGGCGAAGCCATCGCTGGCGCCGAACAGCTGGTCACAACTCTGCAGCAGGCTGCGCAC                 <  2:383971/168‑1                                                                                                                                                                           GCAGCCTGCTGCAGAGTTGTGACCAGCTGTTCTGCGCCAGCGATTGCTTTGCCCCGCGGGGCGAACCCATCGCTGCCGCCGAACAGCTGGTCACAACTCTGCAGCAGGCTGCGCACCCGCTCGCCGACATC  <  1:723387/131‑1                                                                                                                                                                                                                                                                                                               GTGCACCGCCATACGCCGTGCGATCGTCCCGGCCAGGCACCTGGATGCCGTTGCCACCCGCCTGCGCGAGCGCCTGAGCAAGGTCGTGGTTGGCGACCCGTCGCTTGAAGGTGTGCGCATGGGCGCCCTGGCCTCCCATGACCAGCAGCGCGATGTCGGCGAGCGGGTGCGCAGCCTGCTGCAGAGTTGTGACCAGCTGTTCGGCGCCAGCGATGGCTTTGCCCCGCGGGGCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3705114‑3704879 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagCCATCGCTGGCGCCGAACAGCTGGTCACAACTCTGCAGCAGGCTGCGCACCCGCTCGCCGACATC  >  AE015451/3704899‑3704963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.