New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3775312 =	38 (0.950)	3 (0.080)	3/318	NT	8.1%	coding (165/453 nt)	PP_3336	conserved protein of unknown function
	?	AE015451	3775340 =	32 (0.850)					coding (137/453 nt)	PP_3336	conserved protein of unknown function

CCGCGCTACCTGGCGAGGCGTGAACATGCGCCATTGCGGCCTGCGCGCACGCACCTGGGATAACCTCTGGGTCGCGGCGCTGCTTGCCATGCTGCTCAAGGTACTGGCATTGCCCATGGCCAGTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3775438‑3775312 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagtaccTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGAGCATGCACCGTGAATCCGGCGTGTTAATGGCAGGCACAGGCCCGCCAC  >  AE015451/3775340‑3775558                                                                                                                                                                                                                                                                                                                                                            CCGCGCTACCTGGCGAGGCGTGACCATGCGCCTGTGCGGCCTGCGCGCACGCACCTGGGATACCCTCTGGGTCGCGGCGCTGCTTGCCATGCTGCTCAAGGTACGGGCATTCCCCATGGCCAGTACCTGGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGC                                                                                                                                                                      <  1:590044/182‑1                               CCATTGCGGCCTGCGCGCACGCCCCTGGGATAACGTCTGGGTCGCGGCGCTGCTTGCCATGCTGCTCAAGGTACTGGCATTGCCCATGGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGA                                                                                                                                                                                           <  1:332087/131‑1                                                                       GTCGCGGCGCTGCTTGCCATGCTGCTCAAGGTACTGGCATTGCCCATGG                                                                                                                                                                                                                                     >  1:283677/1‑49                                                                       GTCGCGGCGCTGCTTGCCATGCTGCTCAAGGTACTGGCATTGCCCATGG                                                                                                                                                                                                                                     <  2:283676/49‑1                                                                                                                 CCCATGGCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGAGCATGCACCGTGAATCCGGCGTGTTAATGGCAGGCACAGGCCCGCCAC  >  1:590333/1‑234                                                                                                                       GCCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACC                                                                   <  2:724389/163‑1                                                                                                                        CCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGAGCATGAACCGTGAATCCGGC                              >  2:305142/1‑199                                                                                                                        CCAGTACCTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGAGC                                                <  1:519256/181‑1                                                                                                                               CTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCATGAGGNC                                                                                              >  1:369505/1‑128                                                                                                                               CTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGC                                                          >  2:127427/1‑164                                                                                                                               CTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGCCAAACGAACCGGCAGGCGCATACCTGAGCAT                                              >  2:598513/1‑176                                                                                                                                                                                                                                                                                                                                                            CCGCGCTACCTGGCGAGGCGTGAACATGCGCCATTGCGGCCTGCGCGCACGCACCTGGGATAACCTCTGGGTCGCGGCGCTGCTTGCCATGCTGCTCAAGGTACTGGCATTGCCCATGGCCAGTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3775438‑3775312 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagtaccTTGAGCAGCATGGCAAGCAGCGCCGCGACCCAGAGGTTATCCCAGGTGCGTGCGCGCAGGCCGCAATGGCGCATGTTCACGCCTCGCCAGGTAGCGCGGGCGTGGAGATTCGACAGGTCATGAGGGCTTCTCTCCAACGACGGTCAAACCAACCGGCAGGCGCATACCTGAGCATGCACCGTGAATCCGGCGTGTTAATGGCAGGCACAGGCCCGCCAC  >  AE015451/3775340‑3775558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.