New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3970610	NA (NA)	4 (0.110)	4/304	NT	NA	coding (529/1536 nt)	PP_3501	transposase
	?	AE015451	= 3970594	NA (NA)					coding (513/1536 nt)	PP_3501	transposase

GCCGAGCCACGGCAATCGCCCAAACGTGCACCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3970373‑3970610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccggtaccggcgcCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCGGC  <  AE015451/3970594‑3970373                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCCGAGCCACGGCAATCGCCCAAACGTGCACCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGG                                                                                                                                                                                                                                   <  1:452686/235‑1            GCAATCGCCCAAACGTGCACCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGG                                                                                                                                                                                                                                   <  1:739586/224‑1                                       GCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCATTGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATT                                                                                                                                                                                             <  1:709605/235‑1                                                                   CACGAACCCGAAAACACCCACTGCGCCTGTGGCTGCCAACTTCAACGTATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATACACGGTCGAGCCTCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGG                                                                                                                                                                                                                                         <  2:424472/163‑1                                                                                                                                                TTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGT                                                                                                                                                                    <  2:513753/155‑1                                                                                                                                                                   ACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGG                                                                                                                                                                                                                                   <  1:711517/73‑1                                                                                                                                                                                             ATGGGCCTGCCGTCAGTGCGAAACAATGATCCAGGCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTC                                                                                                                                                                          >  2:95478/1‑104                                                                                                                                                                                                                  AACACTGATCCAGGCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGATTGGGCGA                 >  1:578327/1‑236                                                                                                                                                                                                                               GCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGC             >  2:609072/1‑227                                                                                                                                                                                                                                 GCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCGGC  >  1:411556/1‑236                                                                                                                                                                                                                                  CCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCGGC  >  1:292645/1‑235                                                                                                                                                                                                                                  CCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCG    >  2:344569/1‑233                                                                                                                                                                                                                                  CCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGAC                                                                  >  1:357483/1‑171                                                                                                                                                                                                                                  CCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGT                                                                                                                                                                    <  2:711516/73‑1                                                                                                                                                                                                                                              CCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTG         <  1:704786/216‑1                                                                                                                                                                                                                                              CCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGG                                                  >  1:110814/1‑175                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCCGAGCCACGGCAATCGCCCAAACGTGCACCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3970373‑3970610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccggtaccggcgcCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCGGC  <  AE015451/3970594‑3970373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.