New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4261390 =	30 (0.750)	3 (0.080)	3/312	NT	11.1%	coding (1372/2460 nt)	PP_3734	putative ABC transporter, permease protein
	?	AE015451	4261506 =	20 (0.540)					coding (1256/2460 nt)	PP_3734	putative ABC transporter, permease protein

CCTGGCGACTGGCGCAGGGGCCATGGTTGCAACGGCAGGCTTTGCTAGCGGGCCTGCTGCTGTTGCTGGCCTTGGGCTGTGGTGTCTTCGGGGCTGGCTTGCTTAGCGCGTTCGCCATGCTGGCAGGGTTGCTGCTGGCGGCGGCGCTGCTGTTGCCGGCCTTGCTCGATCAGGTACTGGCCTGGCTGGCGCGTCGTTGCCACCGGCCATTGGCGCAATGGTTCGTGGCTGACAGCCGCCAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4261635‑4261390 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccagcagcAACCCTGCCAGCATGGCGAACGCGCTAAGCAAGCCAGCCCCGAAGACACCACAGCCCAAGGCCAGCAACAGCAGCAGGCCCGCTAGCAAAGCCTGCCGTTGCAACCATGGCCCCTGCGCCAGTCGCCAGGCCTGGGGTTGCGCCAGCGCCAGCAAAGGCAACCGGGC  >  AE015451/4261506‑4261672                                                                                                                                                                                                                                                                                                                                                                                                                               CCTGGCGACTGGCGCAGGGGCCATGGTTGCAACGGCAGGCTTTGCTAGCGGGCCTGCTGCTGTTGCTGGCCTTGGGCTGTGGTGTCTTCGGGGCTGGCTTGCTTAGCGCGTTCGCCATGCTGGCAGGGTTGCTGCTGGCGGCGGCGCTGCTGTTGCCGGCCTTGCTCGATCAGGTACTGGCCTGGCTGGCGCGTCGTTGCCACCGGCCATTGGCGCAATGGTTCGTGGCTGACAGC                                                                                                                                                                                   >  1:469738/1‑236        ACTGGCGCAGGGGCCATGGTTGCAACGGCAGGCTTTGCTAGCGGGCCTGCTGCTGTTGCTGGCCTTGGGCTGTGGTGTCTTCGGGGCTGGCTTGCTTAGCGCGTTCGCCATGCTGGCAGGGTTGCTGCTGGCGGCGGCGCTGCTGTTGCCGGCCTTGCTCGATCAGGTACTGGCCTGGCTGGCGCGTCGTTGCCACCGGCCATTGGCGCAATGGTTCGTGGCTGACAGCCGCCAG                                                                                                                                                                             >  1:18105/1‑235                                                                                                                        CTGGCAGGGTTGCTGCTGGCGGCGGCGCTGCTGTTGCCGGCCTTGCTCGATCAGGTACTGGCCTGGCTGGCGCGTCGTTGCCGCCGGCCATTGGCGCAATGGTTCGTGGCTGACAGCCGCCAGCAGCAACCCTGCCAGCATGGCGAACGCGCTAAGCAAGCCAGCCCC                                                                                                                                <  1:512417/168‑1                                                                                                                                                                                    GCCTGGCTGGCGCGTCGTTGCCACCGGCCATTGGCGCAATGGTTCGTGGCTGACAGCCGCCAGCAGCAACCCTGCCAGCATGGCGAACGCGCTAAGCAAGCCAGCCCCGAAGACACCACAGCCCAAGGCCAGCAACAGCAGCAGGCCCGCTAGCAAAGCCTGCCGTTGCAACCATGGCCCCTGCGCCAGTCGCCAGGCCTGGGGTTGCGCCAGCGCCAGCAAAGGCAACCGGGC  <  1:545449/234‑1                                                                                                                                                                                                                  gTGGCGCAATGGTTCGGGGCTGGCAGCCGCCGGCAGCAACCCTGCCAGCATGGCGAACGCGCTAAGCAAG                                                                                                                                        <  2:608375/69‑1                                                                                                                                                                                                                                           GCCGCCAGCAGCAACCCTGCCAGCATGGCGAACGCGCTAAGCAAGCCAGCCCCGAAGACACCACAGCCCAAGGCCAGCAACAGCAGCAGGCCCGCTAGCAAAGCCTGCCGTTGCAAC                                                                <  2:644609/117‑1                                                                                                                                                                                                                                               CCAGCAGCAACCCTGCCAGCATGGCGAACGCGCTAAGCAAGCCAGCCCCGAAGACACCACAGCCCAAGGCCAGCAACAGCA                                                                                                <  1:423989/81‑1                                                                                                                                                                                                                                               CCAGCAGCAACCCTGCCAGCATGGCGAACGCGCTAAGCAAGCCAGCCCCGAAGACACCACAGCCCAAGGCCAGCAACAGCA                                                                                                >  2:423988/1‑81                                                                                                                                                                                                                                                 AGCAGCAACCCTGCCAGCATGGCGAACGCGCTAAGCAAGCCAGCCCCGAAGACACCACAGCCCAAGGCCAGCAACAGCAGCAGGCCCGCTAGCAAAGCCTGCCGTTGCAACCATGGCCCCTGCGCCAGTCGCCA                                         >  2:42874/1‑134                                                                                                                                                                                                                                                                                                                                                                                                                               CCTGGCGACTGGCGCAGGGGCCATGGTTGCAACGGCAGGCTTTGCTAGCGGGCCTGCTGCTGTTGCTGGCCTTGGGCTGTGGTGTCTTCGGGGCTGGCTTGCTTAGCGCGTTCGCCATGCTGGCAGGGTTGCTGCTGGCGGCGGCGCTGCTGTTGCCGGCCTTGCTCGATCAGGTACTGGCCTGGCTGGCGCGTCGTTGCCACCGGCCATTGGCGCAATGGTTCGTGGCTGACAGCCGCCAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4261635‑4261390 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccagcagcAACCCTGCCAGCATGGCGAACGCGCTAAGCAAGCCAGCCCCGAAGACACCACAGCCCAAGGCCAGCAACAGCAGCAGGCCCGCTAGCAAAGCCTGCCGTTGCAACCATGGCCCCTGCGCCAGTCGCCAGGCCTGGGGTTGCGCCAGCGCCAGCAAAGGCAACCGGGC  >  AE015451/4261506‑4261672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.