New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4408994	42 (1.050)	5 (0.130)	5/314	NT	12.0%	coding (1320/1398 nt)	PP_3893	putative Phage DNA helicase
	?	AE015451	= 4409046	34 (0.910)					coding (1268/1398 nt)	PP_3893	putative Phage DNA helicase

CCGTGAGCGATGGCGAAATCTTTGTTGCGGTAGAGCGCAATGGGCGGCTCTGGGTTGGTGGACAGGTCCAGCAGGTCGCTGCGGCAGTACAGCGCGTAGCGGTATTCGGTGACTTCTGGCGGCAGCAGCATCAGAACCTCTCCCCTGGCTGGAAGTTGTTCAGCATCGAGCGGGAGGACCTGCGAGCCGGTTGAGCTGCTGCCTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4408786‑4408994 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcctgctgcAGCATCAGGGCGAGTTCGCCCGGTTTGCCAACTACGCCGGAGCTCGCGAGCAGCAGCAGGCAGCAGCTCAACCGGCTCGCAGGTCCTCCCGCTCGATGCTGAACAACTTCCAGCCAGGGGAGAGGTTCTGATGCTGCTGCCGCCAGAAGTCACCGAATACCGCTACGCGCTGTACTGCCGCAGCGACCTGCTGGACCTGTCCACCAACCCAGAGCCGCCCATTG  <  AE015451/4409046‑4408823                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCGTGAGCGATGGCGAAATCTTTGTTGCGGTAGAGCGCAATGGGCGGCTCTGGGTTGGTGGACAGGTCCAGCAGGTCGCTGCGGCAGTACAGCGCGTAGCGGTATTCGGTGACTTCTGGCGGCAGCAGCATCAGAACCTCTCCCCTGGCTGGAAGTTGTTCAGCATCGAGCGGGAGGACCTGCGAGCCGGTTGAGCTGCTGCCTGCTGCAGCATCAGGGCGAGTTCGCCCGGTTTG                                                                                                                                                                                                       >  1:390761/1‑236                           GCGGTAGAGCGCAATGGGCGGCTCTGGGTTGGTGGACAGGTCCAGCAGGTCGCTGCGGCAGTACAGCGCGTAGCGGTATTCGGTGACTTCTGGCGGCAGCAGCATCAGAACCTCTCCCCTGGCTGGAAGTTGTTCAGCATCGAGCGGGAGGACCTGCGAGCCGGTTGAGCTGCTGCCTGCTGCAGCATCAGGGCGAGTTCGCCCGGTTTGCCAACTACGCCGGAGCTCGCGAG                                                                                                                                                                                <  2:390760/233‑1                                       AATGGGCGGCTCTGGGTTGGTGGACAGGTCCAGCAGGTCGCTGCGGCAGTACAGCGCGTAGCGGTATTCGGTGACTTCTGGCGGCAGCAGCATCAGAACCTCTCCCCTGGCTGGAAGTTGTTCAGCATCGAGCGCGAGGACCTGCGAGCCGGTTGAGCTGCTGCCTGCTGCgg                                                                                                                                                                                                                                >  2:45693/1‑171                                                                                                                                                                          GCGGGAGGACCTGCGAGCCGGTTGAGCTGCTGCCTGCTGCAGCATCAGGGCGAGTTCGCCCGGTTTGCCAACTACGCCGGAGCTCGCGAGCAGCAGCAGGCAGCAGCTCAACCGGCTCGCAGGTCCTCCCGCTCGATGCTGAACA                                                                                                                         >  2:149047/1‑145                                                                                                                                                                                           CCGGTTGAGCTGCTGCCTGCTGCAGCATCAGGGCGAGTTCGCCCGGTTTGCCAACTACGCCGGAGCTCGCGAGCAGCAGCAGGCAGCAGCTCAACCGGCTCTCAGGTCCTCCCGCTCGATGCTGAACAACTTCCAG                                                                                                                 >  1:136549/1‑136                                                                                                                                                                                                 GAGCTGCTGCCTGCTGCAGCATCAGGGCGAGTTCGCCCGGTTTGCCAACTACGCCGGAGCTCG                                                                                                                                                                                    >  2:569045/1‑63                                                                                                                                                                                                          CCTGCTGCAGCATCAGGGCGAGTTCGCCCGGTTTGCCAACTACGCCGGAGCTCGCGAGCAGCAGCAGGCAGCAGCTCAACCGGCTCGCAGGTCCTCCCGCTCGATGCTGAACAACTTCCAGCCAGGGGAGAGGTTCTGATGCTGCTGCCGCCAGAAGTCACCGAATACCGCTACGCGCTGTACTGCCGCAGCGACCTGCTGGACCTGTCCACCAACCCAGAGCCGCCCATTG  <  2:483191/232‑1                                                                                                                                                                                                          CCTGCTGCAGCATCAGGGCGAGTTCGCCCGGTTTGCCAACTACGCCGGAGCTCGCGAGCAGCAGCAGGCAGCAGCTCAACCGGCTCGCAGGTCCTCCCGCTCGATGCTGAACAACTTCCAGCCAGGGGAGAGGTTCTGATGCTGCTGCCGCCAGAAGTCACCGAATACCGCTACGCGCTGTACTGCCGCAGCGAC                                       >  1:158523/1‑195                                                                                                                                                                                                             GCTGCAGCATCAGGGCGAGTTCGCCCGGTTTGCCAACTCCTCCGTAGCTCGCGACCAGCAGCAGGCAGCAGCACAACCGGCTCGCACGTACTCCAGCTCGATGCTGACCAACTTCCCGCCAGGGGAGAGTTTCTGATG                                                                                             <  2:545298/138‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCGTGAGCGATGGCGAAATCTTTGTTGCGGTAGAGCGCAATGGGCGGCTCTGGGTTGGTGGACAGGTCCAGCAGGTCGCTGCGGCAGTACAGCGCGTAGCGGTATTCGGTGACTTCTGGCGGCAGCAGCATCAGAACCTCTCCCCTGGCTGGAAGTTGTTCAGCATCGAGCGGGAGGACCTGCGAGCCGGTTGAGCTGCTGCCTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4408786‑4408994 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcctgctgcAGCATCAGGGCGAGTTCGCCCGGTTTGCCAACTACGCCGGAGCTCGCGAGCAGCAGCAGGCAGCAGCTCAACCGGCTCGCAGGTCCTCCCGCTCGATGCTGAACAACTTCCAGCCAGGGGAGAGGTTCTGATGCTGCTGCCGCCAGAAGTCACCGAATACCGCTACGCGCTGTACTGCCGCAGCGACCTGCTGGACCTGTCCACCAACCCAGAGCCGCCCATTG  <  AE015451/4409046‑4408823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.